Variant report

Variant	rs73412535
Chromosome Location	chr6:2041374-2041375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:1641472..1642157-chr6:2040778..2041465,3	MCF-7	breast:
2	chr6:1641339..1642209-chr6:2040485..2041381,10	MCF-7	breast:
3	chr6:2040678..2043654-chr6:2103622..2106281,2	MCF-7	breast:
4	chr6:2040794..2041414-chr6:2132566..2133423,2	MCF-7	breast:
5	chr6:1641104..1642209-chr6:2040485..2041851,20	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10484947	1.00[ASN][1000 genomes]
rs10484948	1.00[ASN][1000 genomes]
rs11242727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968615	0.88[AFR][1000 genomes]
rs17134626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134684	1.00[ASN][1000 genomes]
rs2076854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28736862	1.00[ASN][1000 genomes]
rs35781270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56905405	1.00[ASN][1000 genomes]
rs57366578	1.00[ASN][1000 genomes]
rs58263056	0.88[AFR][1000 genomes]
rs58499654	1.00[ASN][1000 genomes]
rs59275343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59609802	1.00[ASN][1000 genomes]
rs59936111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59952501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61109748	1.00[ASN][1000 genomes]
rs625781	1.00[ASN][1000 genomes]
rs6930064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410414	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410422	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410429	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410440	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412576	0.88[AFR][1000 genomes]
rs73412601	0.88[AFR][1000 genomes]
rs73414503	0.97[AFR][1000 genomes]
rs73414507	0.94[AFR][1000 genomes]
rs73414521	1.00[ASN][1000 genomes]
rs73414524	1.00[ASN][1000 genomes]
rs73414527	1.00[ASN][1000 genomes]
rs73414530	1.00[ASN][1000 genomes]
rs73414544	1.00[ASN][1000 genomes]
rs73416657	1.00[ASN][1000 genomes]
rs73416659	1.00[ASN][1000 genomes]
rs73427457	1.00[ASN][1000 genomes]
rs73716941	1.00[ASN][1000 genomes]
rs73716945	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv1032727	chr6:1900622-2064690	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538095	chr6:1900622-2064690	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv883386	chr6:1910108-2122454	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv981098	chr6:2008599-2102267	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv527735	chr6:2028237-2097654	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv522608	chr6:2032259-2203888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1019227	chr6:2038843-2142395	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv538097	chr6:2038843-2142395	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2022400-2042800	Weak transcription	Right Atrium	heart
2	chr6:2022400-2055600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:2022400-2080600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:2030000-2053600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:2031800-2041800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:2032600-2043400	Weak transcription	HSMM	muscle
7	chr6:2034200-2044400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:2035600-2052600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:2037000-2043800	Enhancers	Fetal Thymus	thymus
10	chr6:2038600-2043800	Enhancers	Thymus	Thymus
11	chr6:2039000-2044200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:2039400-2052600	Weak transcription	HepG2	liver
13	chr6:2040600-2045400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:2041000-2041800	Enhancers	Fetal Kidney	kidney
15	chr6:2041200-2043200	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links