Variant report

Variant	rs35867728
Chromosome Location	chr10:95882970-95882971
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12779492	1.00[ASN][1000 genomes]
rs35939506	1.00[ASN][1000 genomes]
rs61886297	1.00[ASN][1000 genomes]
rs61886302	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814612	1.00[ASN][1000 genomes]
rs942676	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95864200-95891200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:95871200-95883800	Weak transcription	Spleen	Spleen
4	chr10:95875800-95905600	Weak transcription	Gastric	stomach
5	chr10:95879400-95883200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:95880800-95884000	Enhancers	Fetal Muscle Leg	muscle
7	chr10:95881000-95884200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:95881200-95884000	Enhancers	Aorta	Aorta
9	chr10:95881400-95884000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:95881400-95884000	Enhancers	Right Atrium	heart
11	chr10:95881400-95886400	Enhancers	NHDF-Ad	bronchial
12	chr10:95881400-95886400	Enhancers	NHLF	lung
13	chr10:95881600-95886400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:95881600-95886400	Enhancers	Osteobl	bone
15	chr10:95881600-95886600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:95881600-95891200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:95881800-95883800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:95881800-95884000	Enhancers	Left Ventricle	heart
19	chr10:95881800-95885600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:95881800-95886600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:95882000-95883600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:95882000-95884000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr10:95882000-95884600	Weak transcription	Brain Angular Gyrus	brain
24	chr10:95882000-95886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:95882000-95891600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:95882000-95893000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:95882200-95883400	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr10:95882200-95883800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:95882200-95883800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:95882200-95883800	Enhancers	Fetal Stomach	stomach
31	chr10:95882200-95883800	Enhancers	NH-A	brain
32	chr10:95882200-95884000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:95882200-95884200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr10:95882200-95884600	Flanking Active TSS	A549	lung
35	chr10:95882200-95884600	Enhancers	HepG2	liver
36	chr10:95882200-95885800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:95882400-95883400	Enhancers	Colon Smooth Muscle	Colon
38	chr10:95882400-95883800	Enhancers	NHEK	skin
39	chr10:95882400-95884000	Enhancers	HSMM	muscle
40	chr10:95882400-95884400	Enhancers	HSMMtube	muscle
41	chr10:95882600-95883200	Enhancers	Colonic Mucosa	Colon
42	chr10:95882600-95883200	Enhancers	Ovary	ovary
43	chr10:95882600-95883400	Enhancers	Brain Substantia Nigra	brain
44	chr10:95882600-95883600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:95882600-95883800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:95882600-95883800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:95882600-95883800	Enhancers	Fetal Heart	heart
48	chr10:95882600-95883800	Enhancers	HMEC	breast
49	chr10:95882600-95884000	Enhancers	Fetal Intestine Small	intestine
50	chr10:95882600-95884000	Enhancers	Rectal Smooth Muscle	rectum

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