Variant report

Variant	rs61886302
Chromosome Location	chr10:95886354-95886355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95885741..95887705-chr10:95888697..95891598,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12779492	1.00[ASN][1000 genomes]
rs35867728	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35939506	1.00[ASN][1000 genomes]
rs61886297	1.00[ASN][1000 genomes]
rs72814612	1.00[ASN][1000 genomes]
rs942676	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95864200-95891200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:95875800-95905600	Weak transcription	Gastric	stomach
4	chr10:95881400-95886400	Enhancers	NHDF-Ad	bronchial
5	chr10:95881400-95886400	Enhancers	NHLF	lung
6	chr10:95881600-95886400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:95881600-95886400	Enhancers	Osteobl	bone
8	chr10:95881600-95886600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:95881600-95891200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:95881800-95886600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:95882000-95886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:95882000-95891600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:95882000-95893000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:95883200-95897600	Weak transcription	Colonic Mucosa	Colon
15	chr10:95883200-95902400	Weak transcription	Ovary	ovary
16	chr10:95883400-95890800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:95883400-95893400	Weak transcription	Brain Substantia Nigra	brain
18	chr10:95883600-95888800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:95883600-95889200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:95883800-95888800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:95883800-95889200	Weak transcription	Fetal Stomach	stomach
22	chr10:95883800-95890800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:95883800-95891200	Weak transcription	Fetal Lung	lung
24	chr10:95883800-95891400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:95883800-95891600	Weak transcription	NHEK	skin
26	chr10:95884000-95888800	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:95884000-95888800	Weak transcription	Right Atrium	heart
28	chr10:95884000-95890600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:95884000-95892000	Weak transcription	Fetal Intestine Small	intestine
30	chr10:95884000-95893000	Weak transcription	Fetal Intestine Large	intestine
31	chr10:95884000-95893000	Weak transcription	Left Ventricle	heart
32	chr10:95884200-95892000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:95884200-95893000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:95884400-95886400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:95885000-95886400	Enhancers	NH-A	brain
36	chr10:95885000-95893200	Weak transcription	Brain Angular Gyrus	brain
37	chr10:95885200-95886400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:95885200-95893200	Weak transcription	Brain Anterior Caudate	brain
39	chr10:95885600-95887400	Enhancers	Aorta	Aorta
40	chr10:95885800-95888600	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:95886000-95886600	Enhancers	A549	lung
42	chr10:95886000-95888800	Weak transcription	HSMMtube	muscle
43	chr10:95886000-95889200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:95886000-95889400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:95886000-95889600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:95886000-95889600	Weak transcription	HSMM	muscle
47	chr10:95886000-95891200	Weak transcription	Stomach Mucosa	stomach
48	chr10:95886000-95893000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:95886000-95893000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:95886200-95886600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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