Variant report

Variant	rs942676
Chromosome Location	chr10:96076495-96076496
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:96076319-96076519	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:96075690-96076620	HepG2	liver:	n/a	n/a
3	FOS	chr10:96076449-96076632	MCF10A-Er-Src	breast:	n/a	chr10:96076574-96076582
4	STAT3	chr10:96076422-96076622	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96071834..96074250-chr10:96075150..96077634,3	K562	blood:
2	chr10:96076256..96077849-chr10:96078419..96080077,2	K562	blood:

Variant related genes	Relation type
ENSG00000273450	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10882455	1.00[ASN][1000 genomes]
rs35867728	1.00[ASN][1000 genomes]
rs61886297	1.00[ASN][1000 genomes]
rs61886302	1.00[ASN][1000 genomes]
rs72814612	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
2	chr10:96036000-96081600	Weak transcription	Left Ventricle	heart
3	chr10:96043600-96121000	Weak transcription	Psoas Muscle	Psoas
4	chr10:96049400-96081600	Weak transcription	Spleen	Spleen
5	chr10:96053000-96083200	Weak transcription	Fetal Kidney	kidney
6	chr10:96053200-96081600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:96059400-96083200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:96059600-96081600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:96063600-96076600	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr10:96067400-96081800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:96067400-96084400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:96069200-96089800	Weak transcription	HUVEC	blood vessel
13	chr10:96069600-96081600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:96070200-96081800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:96070400-96081800	Weak transcription	Lung	lung
16	chr10:96071000-96077800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:96071000-96081600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:96071400-96081800	Weak transcription	Colonic Mucosa	Colon
19	chr10:96072000-96079200	Weak transcription	HSMM	muscle
20	chr10:96072400-96080800	Weak transcription	GM12878-XiMat	blood
21	chr10:96072600-96080400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:96072600-96081600	Weak transcription	Esophagus	oesophagus
23	chr10:96072800-96093800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:96073200-96084200	Weak transcription	Brain Germinal Matrix	brain
25	chr10:96073800-96077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:96073800-96084000	Weak transcription	Ovary	ovary
27	chr10:96074000-96080400	Weak transcription	A549	lung
28	chr10:96074000-96081000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:96074000-96081600	Weak transcription	Fetal Brain Female	brain
30	chr10:96074000-96084200	Weak transcription	Gastric	stomach
31	chr10:96074400-96076600	Enhancers	Fetal Lung	lung
32	chr10:96074600-96076600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:96074600-96076600	Enhancers	Fetal Intestine Large	intestine
34	chr10:96074600-96076600	Enhancers	NHLF	lung
35	chr10:96074800-96076600	Enhancers	Colon Smooth Muscle	Colon
36	chr10:96074800-96076600	Enhancers	NHDF-Ad	bronchial
37	chr10:96074800-96076800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:96074800-96077000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:96075000-96076600	Enhancers	Rectal Smooth Muscle	rectum
40	chr10:96075200-96076600	Enhancers	Fetal Stomach	stomach
41	chr10:96075200-96078400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:96075200-96080400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:96075200-96081200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:96075200-96081600	Weak transcription	Placenta	Placenta
45	chr10:96075200-96081800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:96075200-96081800	Weak transcription	Pancreas	Pancrea
47	chr10:96075200-96091000	Weak transcription	Right Ventricle	heart
48	chr10:96075200-96112200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:96075400-96081600	Weak transcription	Aorta	Aorta
50	chr10:96075600-96076600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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