Variant report

Variant	rs72814612
Chromosome Location	chr10:95941459-95941460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12779492	1.00[ASN][1000 genomes]
rs35867728	1.00[ASN][1000 genomes]
rs35939506	1.00[ASN][1000 genomes]
rs61886297	1.00[ASN][1000 genomes]
rs61886302	1.00[ASN][1000 genomes]
rs942676	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95924800-95947200	Weak transcription	Aorta	Aorta
2	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
4	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:95931800-95952600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:95932000-95944200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:95932000-95948800	Weak transcription	Gastric	stomach
8	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
9	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
11	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
13	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
14	chr10:95935200-95942400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:95936200-95943200	Weak transcription	Fetal Intestine Small	intestine
16	chr10:95936800-95942600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:95938600-95942600	Weak transcription	A549	lung
18	chr10:95939200-95942600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:95939200-95943400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:95939200-95952800	Weak transcription	Ovary	ovary
21	chr10:95939400-95945000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:95939600-95942600	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:95940600-95941600	Strong transcription	Fetal Stomach	stomach
24	chr10:95940600-95944200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr10:95940600-95952800	Weak transcription	Fetal Lung	lung
26	chr10:95941000-95943200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:95941400-95942800	Weak transcription	NHLF	lung

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