Variant report

Variant	rs61886297
Chromosome Location	chr10:95830221-95830222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12779492	1.00[ASN][1000 genomes]
rs35867728	1.00[ASN][1000 genomes]
rs35939506	1.00[ASN][1000 genomes]
rs61886302	1.00[ASN][1000 genomes]
rs72814612	1.00[ASN][1000 genomes]
rs942676	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947687	chr10:95827787-95832796	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95814400-95836400	Weak transcription	Psoas Muscle	Psoas
2	chr10:95820400-95832800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:95823000-95836400	Weak transcription	Aorta	Aorta
4	chr10:95823200-95830800	Enhancers	Fetal Intestine Small	intestine
5	chr10:95823600-95830400	Enhancers	Fetal Intestine Large	intestine
6	chr10:95825200-95835400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:95825800-95836000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:95825800-95850400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:95827000-95835200	Weak transcription	A549	lung
10	chr10:95827800-95831600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:95829400-95830600	Enhancers	Fetal Heart	heart
12	chr10:95829600-95830400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:95829600-95830400	Enhancers	Right Ventricle	heart
14	chr10:95829600-95830600	Enhancers	Fetal Muscle Leg	muscle
15	chr10:95829800-95830400	Enhancers	Fetal Brain Female	brain
16	chr10:95829800-95835400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:95829800-95835400	Weak transcription	HSMMtube	muscle
18	chr10:95830000-95835600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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