Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11966044	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13190939	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13196312	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1338388	0.86[EUR][1000 genomes]
rs17061202	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17792959	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28385615	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34390977	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34608104	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34807768	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36085961	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897576	0.82[EUR][1000 genomes]
rs6914923	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72994821	0.89[ASN][1000 genomes]
rs7740690	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7761051	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7763146	0.81[EUR][1000 genomes]
rs7766544	0.81[EUR][1000 genomes]
rs9375876	0.86[EUR][1000 genomes]
rs9375877	0.86[EUR][1000 genomes]
rs9493294	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
2	chr6:132656000-132676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132656800-132675400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132656800-132676000	Weak transcription	NHDF-Ad	bronchial
5	chr6:132658200-132674000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:132658200-132674800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132662800-132665800	Weak transcription	Osteobl	bone
8	chr6:132662800-132669200	Weak transcription	Fetal Kidney	kidney
9	chr6:132665400-132666400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr6:132665600-132666000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:132665600-132666200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:132665600-132666400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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