Variant report

Variant	rs7763146
Chromosome Location	chr6:132681258-132681259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10499185	0.92[CEU][hapmap]
rs11966044	0.84[EUR][1000 genomes]
rs13190939	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs13196312	0.92[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs1338387	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1338388	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs17061202	0.91[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs17792959	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1981187	0.93[EUR][1000 genomes]
rs28385615	0.88[EUR][1000 genomes]
rs34390977	0.88[EUR][1000 genomes]
rs34608104	0.87[EUR][1000 genomes]
rs34807768	0.87[EUR][1000 genomes]
rs35876357	0.81[EUR][1000 genomes]
rs36085961	0.88[EUR][1000 genomes]
rs4897576	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4897577	0.93[EUR][1000 genomes]
rs6909136	0.94[CHB][hapmap]
rs6914923	0.88[EUR][1000 genomes]
rs7740690	0.87[EUR][1000 genomes]
rs7761051	0.92[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs7766544	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375876	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9375877	0.92[CEU][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs9385602	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs9388985	0.89[EUR][1000 genomes]
rs9493294	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7763146	ZYG11B	trans	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132673800-132683000	Weak transcription	Esophagus	oesophagus
2	chr6:132676400-132681800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:132676400-132686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132676600-132681400	Weak transcription	Fetal Stomach	stomach
5	chr6:132676600-132682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:132677200-132688600	Weak transcription	Osteobl	bone
7	chr6:132677400-132701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:132678400-132681400	Weak transcription	Fetal Kidney	kidney
9	chr6:132678600-132681800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:132678600-132690400	Weak transcription	NH-A	brain
11	chr6:132679000-132690000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:132679200-132683800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:132679600-132683600	Weak transcription	NHDF-Ad	bronchial
14	chr6:132680800-132682800	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:132681000-132682000	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:132681000-132682600	Enhancers	Primary B cells from cord blood	blood
17	chr6:132681200-132681800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:132681200-132682200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:132681200-132682200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:132681200-132682600	Enhancers	Fetal Lung	lung

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