Variant report

Variant	rs34807768
Chromosome Location	chr6:132676279-132676280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11966044	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13190939	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13196312	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338387	0.82[EUR][1000 genomes]
rs1338388	0.92[EUR][1000 genomes]
rs17061202	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17792959	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1981187	0.81[EUR][1000 genomes]
rs28385615	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34390977	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34608104	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35876357	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36085961	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4897577	0.81[EUR][1000 genomes]
rs6914923	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994821	0.98[ASN][1000 genomes]
rs7740690	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761051	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763146	0.87[EUR][1000 genomes]
rs7766544	0.87[EUR][1000 genomes]
rs9375876	0.92[EUR][1000 genomes]
rs9375877	0.92[EUR][1000 genomes]
rs9385602	0.81[EUR][1000 genomes]
rs9493294	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132669600-132678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:132671200-132678400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:132673800-132683000	Weak transcription	Esophagus	oesophagus
4	chr6:132674000-132677200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132674200-132676600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr6:132674400-132676400	Weak transcription	Fetal Kidney	kidney
7	chr6:132675200-132677200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:132675400-132676400	Enhancers	Primary T cells from cord blood	blood
9	chr6:132675400-132676400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:132675400-132676400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:132675400-132676600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:132675400-132676600	Strong transcription	Fetal Lung	lung
13	chr6:132675400-132676800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:132675400-132676800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:132675400-132676800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:132675400-132676800	Enhancers	Dnd41	blood
17	chr6:132675400-132677200	ZNF genes & repeats	GM12878-XiMat	blood
18	chr6:132675400-132677200	Strong transcription	Osteobl	bone
19	chr6:132675600-132676400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:132675600-132676400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:132675600-132676400	Enhancers	Fetal Thymus	thymus
22	chr6:132675600-132676600	ZNF genes & repeats	Fetal Stomach	stomach
23	chr6:132675600-132676600	Enhancers	Thymus	Thymus
24	chr6:132675600-132676600	Enhancers	Spleen	Spleen
25	chr6:132675600-132676800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:132675600-132677000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:132675600-132677200	Enhancers	Primary B cells from cord blood	blood
28	chr6:132675800-132676400	Enhancers	Adipose Nuclei	Adipose
29	chr6:132675800-132676600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr6:132675800-132676800	Enhancers	HMEC	breast
31	chr6:132676000-132676400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:132676000-132676400	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:132676000-132676600	Enhancers	Lung	lung
34	chr6:132676000-132676600	Enhancers	A549	lung
35	chr6:132676000-132676800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:132676000-132676800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:132676000-132677000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:132676000-132677000	Enhancers	NHEK	skin
39	chr6:132676000-132677800	Strong transcription	NHDF-Ad	bronchial
40	chr6:132676200-132676400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr6:132676200-132676400	Enhancers	NH-A	brain
42	chr6:132676200-132676600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:132676200-132676600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:132676200-132676600	Enhancers	Rectal Smooth Muscle	rectum
45	chr6:132676200-132676600	Enhancers	Hela-S3	cervix
46	chr6:132676200-132677400	Enhancers	Primary B cells from peripheral blood	blood
47	chr6:132676200-132677400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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