Variant report

Variant	rs17792959
Chromosome Location	chr6:132693226-132693227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132687277..132689536-chr6:132691486..132694409,3	K562	blood:
2	chr6:132684114..132687099-chr6:132691049..132693602,3	MCF-7	breast:
3	chr6:132687277..132689201-chr6:132691486..132694409,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10484483	0.93[CHB][hapmap]
rs10499185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11966044	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11968833	0.87[CHB][hapmap]
rs13190939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13196312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338387	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs1338388	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17061202	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17637818	0.93[CHB][hapmap]
rs1981187	0.82[EUR][1000 genomes]
rs28385615	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34390977	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34608104	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34807768	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35876357	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36085961	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4897577	0.82[EUR][1000 genomes]
rs6914923	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72994821	0.92[ASN][1000 genomes]
rs7740690	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7761051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7763146	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7766544	0.88[EUR][1000 genomes]
rs9375876	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9375877	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9385602	0.82[EUR][1000 genomes]
rs9493294	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9493297	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132677400-132701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:132682200-132705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132689600-132693600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132691400-132694600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132692000-132701200	Weak transcription	Osteobl	bone
6	chr6:132692200-132694200	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:132692200-132698400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:132692600-132709200	Weak transcription	Fetal Kidney	kidney
9	chr6:132692800-132694800	Strong transcription	NHDF-Ad	bronchial
10	chr6:132693200-132709400	Weak transcription	Fetal Lung	lung

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