Variant report

Variant	rs4897577
Chromosome Location	chr6:132677158-132677159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13190939	0.81[EUR][1000 genomes]
rs13196312	0.82[EUR][1000 genomes]
rs1338387	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338388	0.88[EUR][1000 genomes]
rs17061202	0.82[EUR][1000 genomes]
rs17792959	0.82[EUR][1000 genomes]
rs1981187	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28385615	0.82[EUR][1000 genomes]
rs34390977	0.82[EUR][1000 genomes]
rs34608104	0.81[EUR][1000 genomes]
rs34807768	0.81[EUR][1000 genomes]
rs36085961	0.82[EUR][1000 genomes]
rs4897576	0.80[EUR][1000 genomes]
rs6914923	0.82[EUR][1000 genomes]
rs7740690	0.83[EUR][1000 genomes]
rs7761051	0.82[EUR][1000 genomes]
rs7762136	0.82[AMR][1000 genomes]
rs7763146	0.93[EUR][1000 genomes]
rs7766544	0.93[EUR][1000 genomes]
rs9375876	0.88[EUR][1000 genomes]
rs9375877	0.88[EUR][1000 genomes]
rs9385602	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388985	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493294	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132669600-132678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:132671200-132678400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:132673800-132683000	Weak transcription	Esophagus	oesophagus
4	chr6:132674000-132677200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132675200-132677200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:132675400-132677200	ZNF genes & repeats	GM12878-XiMat	blood
7	chr6:132675400-132677200	Strong transcription	Osteobl	bone
8	chr6:132675600-132677200	Enhancers	Primary B cells from cord blood	blood
9	chr6:132676000-132677800	Strong transcription	NHDF-Ad	bronchial
10	chr6:132676200-132677400	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:132676200-132677400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:132676400-132677600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:132676400-132677800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:132676400-132678400	Weak transcription	NH-A	brain
15	chr6:132676400-132681800	Weak transcription	Primary T cells from cord blood	blood
16	chr6:132676400-132686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:132676600-132677200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:132676600-132677200	Weak transcription	Fetal Lung	lung
19	chr6:132676600-132677400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:132676600-132681400	Weak transcription	Fetal Stomach	stomach
21	chr6:132676600-132682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:132676800-132677400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:132677000-132677200	Strong transcription	Fetal Kidney	kidney
24	chr6:132677000-132678200	Weak transcription	NHEK	skin

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