Variant report

Variant	rs34608104
Chromosome Location	chr6:132673848-132673849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11966044	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13190939	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13196312	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338387	0.82[EUR][1000 genomes]
rs1338388	0.92[EUR][1000 genomes]
rs17061202	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17792959	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1981187	0.81[EUR][1000 genomes]
rs28385615	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34390977	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34807768	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35876357	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36085961	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4897577	0.81[EUR][1000 genomes]
rs6914923	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994821	0.98[ASN][1000 genomes]
rs7740690	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763146	0.87[EUR][1000 genomes]
rs7766544	0.87[EUR][1000 genomes]
rs9375876	0.92[EUR][1000 genomes]
rs9375877	0.92[EUR][1000 genomes]
rs9385602	0.81[EUR][1000 genomes]
rs9493294	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
2	chr6:132656000-132676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132656800-132675400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132656800-132676000	Weak transcription	NHDF-Ad	bronchial
5	chr6:132658200-132674000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:132658200-132674800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132666200-132674000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:132666200-132675400	Weak transcription	Osteobl	bone
9	chr6:132666400-132676000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:132669600-132678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:132671200-132678400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:132672600-132674000	Enhancers	Primary B cells from cord blood	blood
13	chr6:132672600-132675200	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:132673800-132683000	Weak transcription	Esophagus	oesophagus

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