Variant report

Variant	rs35928814
Chromosome Location	chr8:130669053-130669054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12155665	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12544799	0.92[ASN][1000 genomes]
rs12545821	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13249422	0.93[ASN][1000 genomes]
rs13249717	0.95[ASN][1000 genomes]
rs13250002	0.95[ASN][1000 genomes]
rs13252239	0.94[ASN][1000 genomes]
rs13258791	0.95[ASN][1000 genomes]
rs16904136	0.92[ASN][1000 genomes]
rs16904138	0.92[ASN][1000 genomes]
rs16904139	0.92[ASN][1000 genomes]
rs28491539	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34135752	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34271371	1.00[ASN][1000 genomes]
rs34325696	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34389024	0.94[ASN][1000 genomes]
rs35057631	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4327829	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4397370	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4448234	0.88[ASN][1000 genomes]
rs4518628	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4562281	0.89[ASN][1000 genomes]
rs4566996	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4609165	0.89[ASN][1000 genomes]
rs4626563	0.92[ASN][1000 genomes]
rs4733553	0.88[ASN][1000 genomes]
rs4733556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4733720	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58311093	0.92[ASN][1000 genomes]
rs6470753	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6985166	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6991709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6991966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6997969	0.92[ASN][1000 genomes]
rs6998156	0.92[ASN][1000 genomes]
rs6998279	0.92[ASN][1000 genomes]
rs6998547	0.92[ASN][1000 genomes]
rs6998877	0.91[ASN][1000 genomes]
rs7006026	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7006796	0.94[ASN][1000 genomes]
rs71522551	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7812657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7841900	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841975	0.88[ASN][1000 genomes]
rs9792140	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9792265	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130668600-130669200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:130668800-130670200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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