Variant report

Variant	rs4448234
Chromosome Location	chr8:130684983-130684984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130678074..130680265-chr8:130683828..130686735,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10097823	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10098045	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs12155665	0.84[ASN][1000 genomes]
rs12544799	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12545821	0.92[ASN][1000 genomes]
rs13249422	0.84[ASN][1000 genomes]
rs13249717	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs13250002	0.84[ASN][1000 genomes]
rs13250085	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs13252239	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs13256078	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs13258791	0.84[ASN][1000 genomes]
rs13267723	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16904128	0.84[CHB][hapmap]
rs16904136	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs16904138	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs16904139	0.92[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs28491539	0.89[ASN][1000 genomes]
rs34135752	0.89[ASN][1000 genomes]
rs34271371	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34325696	0.92[ASN][1000 genomes]
rs34389024	0.82[ASN][1000 genomes]
rs35057631	0.84[ASN][1000 genomes]
rs35928814	0.88[ASN][1000 genomes]
rs4327829	0.85[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4397370	0.92[ASN][1000 genomes]
rs4518628	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4562281	0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4565426	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs4566996	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4609165	0.80[ASN][1000 genomes]
rs4626563	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4733553	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4733556	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4733720	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs58311093	0.83[ASN][1000 genomes]
rs6470753	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6985166	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6987436	0.95[JPT][hapmap]
rs6991709	0.86[ASN][1000 genomes]
rs6991966	0.89[ASN][1000 genomes]
rs6997969	0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6998156	0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6998279	0.83[ASN][1000 genomes]
rs6998547	0.83[ASN][1000 genomes]
rs6998877	0.82[ASN][1000 genomes]
rs7006026	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7006796	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71522551	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7812657	0.89[ASN][1000 genomes]
rs7828331	0.84[CHB][hapmap]
rs7841900	0.88[ASN][1000 genomes]
rs7841975	0.81[ASN][1000 genomes]
rs9792140	0.92[ASN][1000 genomes]
rs9792265	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130682600-130694000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:130684600-130685000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:130684800-130686000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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