Variant report

Variant	rs12544799
Chromosome Location	chr8:130663510-130663511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130662457..130664068-chr8:130664538..130667140,2	MCF-7	breast:
2	chr8:130662516..130664208-chr8:130664752..130666833,2	K562	blood:
3	chr8:130661192..130664016-chr8:130665123..130667004,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10097823	0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs10098045	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs12155665	0.97[ASN][1000 genomes]
rs12545821	0.92[ASN][1000 genomes]
rs13249422	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13249717	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250002	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250085	0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs13252239	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13256078	0.92[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13258791	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16904128	0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs16904136	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904138	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408379	0.86[ASN][1000 genomes]
rs28464338	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28491539	0.91[ASN][1000 genomes]
rs34064664	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34135752	0.91[ASN][1000 genomes]
rs34271371	0.92[ASN][1000 genomes]
rs34325696	0.92[ASN][1000 genomes]
rs34389024	0.94[ASN][1000 genomes]
rs35057631	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35319444	0.86[ASN][1000 genomes]
rs35406957	0.86[ASN][1000 genomes]
rs35484532	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35823317	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35928814	0.92[ASN][1000 genomes]
rs36121385	0.86[ASN][1000 genomes]
rs4327829	0.92[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs4397369	0.86[ASN][1000 genomes]
rs4397370	0.88[ASN][1000 genomes]
rs4448234	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4518628	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.88[ASN][1000 genomes]
rs4562281	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4565426	0.92[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4566996	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs4609165	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4626563	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634602	0.84[ASN][1000 genomes]
rs4733553	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4733556	0.93[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs4733720	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs58311093	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470753	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs6985166	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs6987436	0.84[JPT][hapmap]
rs6991709	0.89[ASN][1000 genomes]
rs6991966	0.91[ASN][1000 genomes]
rs6997969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998156	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998279	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998547	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998877	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7006026	0.93[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7006796	0.86[ASN][1000 genomes]
rs71522551	0.94[ASN][1000 genomes]
rs7812657	0.91[ASN][1000 genomes]
rs7814618	0.81[GIH][hapmap]
rs7819128	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs7828331	0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs7841900	0.92[ASN][1000 genomes]
rs7841975	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9792140	0.88[ASN][1000 genomes]
rs9792265	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130662200-130667200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130663400-130664400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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