Variant report

Variant	rs6985166
Chromosome Location	chr8:130679176-130679177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130678074..130680265-chr8:130683828..130686735,2	K562	blood:
2	chr8:130675152..130676691-chr8:130678992..130680663,2	K562	blood:
3	chr8:130595446..130597443-chr8:130678886..130681911,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10097823	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs10098045	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs12155665	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12544799	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs12545821	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13249422	0.90[ASN][1000 genomes]
rs13249717	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs13250002	0.92[ASN][1000 genomes]
rs13250085	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs13252239	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs13256078	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs13258791	0.92[ASN][1000 genomes]
rs16904128	0.86[CHB][hapmap]
rs16904136	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs16904138	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs16904139	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs28491539	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34135752	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34271371	0.97[ASN][1000 genomes]
rs34325696	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34389024	0.91[ASN][1000 genomes]
rs35057631	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35928814	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4327829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4397370	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4448234	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4518628	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4562281	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs4565426	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4566996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609165	0.86[ASN][1000 genomes]
rs4626563	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs4733553	0.93[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4733556	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4733720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58311093	0.89[ASN][1000 genomes]
rs6470753	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6987436	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6991709	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6991966	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6997969	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs6998156	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs6998279	0.89[ASN][1000 genomes]
rs6998547	0.89[ASN][1000 genomes]
rs6998877	0.88[ASN][1000 genomes]
rs7006026	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7006796	0.97[ASN][1000 genomes]
rs71522551	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7812657	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7828331	0.86[CHB][hapmap]
rs7841900	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841975	0.87[ASN][1000 genomes]
rs9792140	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9792265	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130675800-130680400	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:130676400-130680000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:130676800-130680200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:130678000-130679400	Enhancers	Primary B cells from cord blood	blood
5	chr8:130678000-130679600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr8:130678200-130679200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:130679000-130680200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:130679000-130680400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links