Variant report

Variant	rs10097823
Chromosome Location	chr8:130634286-130634287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130626321..130628094-chr8:130634050..130635851,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GSDMC-6	chr8:130633688-130634496	expReg_chr8_7061_-

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10098045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155665	0.83[ASN][1000 genomes]
rs12544799	0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs12545821	0.80[ASN][1000 genomes]
rs13249422	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13249717	0.87[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13250002	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13250085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252239	0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs13256078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13258791	0.83[ASN][1000 genomes]
rs13263823	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16904128	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904136	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16904138	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16904139	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs28408379	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28464338	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34064664	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34325696	0.80[ASN][1000 genomes]
rs34389024	0.81[ASN][1000 genomes]
rs34547718	0.80[EUR][1000 genomes]
rs35057631	0.83[ASN][1000 genomes]
rs35319444	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35406957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35484532	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35823317	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36121385	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327829	0.85[CHB][hapmap]
rs4397369	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4448234	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4518628	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs4562281	0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4565426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4566996	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs4609165	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4626563	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4634602	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4733553	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733556	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs4733720	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs55719299	0.81[EUR][1000 genomes]
rs58311093	0.86[ASN][1000 genomes]
rs6470753	0.92[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6985166	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6987436	0.86[CHB][hapmap]
rs6997969	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs6998156	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs6998279	0.86[ASN][1000 genomes]
rs6998547	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6998877	0.85[ASN][1000 genomes]
rs7006026	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs71522551	0.82[ASN][1000 genomes]
rs7814618	0.95[GIH][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap]
rs7819128	0.83[ASW][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.81[YRI][hapmap]
rs7828331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7834911	0.83[MKK][hapmap];0.86[TSI][hapmap]
rs7841975	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130632800-130634400	Weak transcription	Dnd41	blood
2	chr8:130633000-130636800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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