Variant report

Variant	rs7819128
Chromosome Location	chr8:130630157-130630158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10097823	0.83[ASW][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.81[YRI][hapmap]
rs10098045	0.80[EUR][1000 genomes]
rs12544799	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs12550563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250085	1.00[GIH][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs13256078	0.80[EUR][1000 genomes]
rs13263823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16904128	1.00[GIH][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs16904136	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs16904138	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs28408379	0.80[EUR][1000 genomes]
rs28464338	0.80[EUR][1000 genomes]
rs34064664	0.80[EUR][1000 genomes]
rs35319444	0.80[EUR][1000 genomes]
rs35406957	0.80[EUR][1000 genomes]
rs36121385	0.80[EUR][1000 genomes]
rs4397369	0.80[EUR][1000 genomes]
rs4565426	0.80[EUR][1000 genomes]
rs4626563	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs4733553	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs7814618	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828331	1.00[GIH][hapmap];0.85[JPT][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7834911	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv525691	chr8:130627555-130631930	Enhancers Genic enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130629800-130632000	Enhancers	Dnd41	blood
2	chr8:130630000-130632400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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