Variant report

Variant	rs16904136
Chromosome Location	chr8:130654746-130654747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130649580..130655005-chr8:130656541..130661104,6	K562	blood:
2	chr8:130646298..130649047-chr8:130652440..130655426,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10097823	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10098045	0.87[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12155665	0.97[ASN][1000 genomes]
rs12544799	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545821	0.92[ASN][1000 genomes]
rs13249422	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13249717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250002	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250085	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13252239	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13256078	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13258791	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13263823	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs16904128	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16904138	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904139	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408379	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28464338	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28491539	0.91[ASN][1000 genomes]
rs34064664	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34135752	0.91[ASN][1000 genomes]
rs34271371	0.92[ASN][1000 genomes]
rs34325696	0.92[ASN][1000 genomes]
rs34389024	0.94[ASN][1000 genomes]
rs34547718	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35057631	0.97[ASN][1000 genomes]
rs35319444	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35406957	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35484532	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35823317	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35928814	0.92[ASN][1000 genomes]
rs36121385	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4327829	0.92[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs4397369	0.88[CEU][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4397370	0.88[ASN][1000 genomes]
rs4448234	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4518628	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs4562281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4565426	0.87[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4566996	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs4609165	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4626563	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634602	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4733553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4733556	0.93[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs4733720	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs55719299	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58311093	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470753	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs6985166	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs6987436	0.84[JPT][hapmap]
rs6991709	0.89[ASN][1000 genomes]
rs6991966	0.91[ASN][1000 genomes]
rs6997969	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998279	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998547	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998877	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7006026	0.93[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7006796	0.86[ASN][1000 genomes]
rs71522551	0.94[ASN][1000 genomes]
rs7812657	0.91[ASN][1000 genomes]
rs7814618	0.81[GIH][hapmap]
rs7819128	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs7828331	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7841900	0.92[ASN][1000 genomes]
rs7841975	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9792140	0.88[ASN][1000 genomes]
rs9792265	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130651000-130655400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:130651400-130654800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:130652600-130656000	Weak transcription	Fetal Lung	lung
4	chr8:130653400-130654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:130654000-130654800	Enhancers	Fetal Muscle Leg	muscle
6	chr8:130654400-130655200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:130654400-130656400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:130654600-130655800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links