Variant report

Variant	rs4634602
Chromosome Location	chr8:130636482-130636483
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10097823	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10098045	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12155665	0.81[ASN][1000 genomes]
rs12544799	0.84[ASN][1000 genomes]
rs13249422	0.83[ASN][1000 genomes]
rs13249717	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13250002	0.81[ASN][1000 genomes]
rs13250085	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13252239	0.80[ASN][1000 genomes]
rs13256078	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13258791	0.81[ASN][1000 genomes]
rs13263823	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16904128	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16904136	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16904138	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16904139	0.84[ASN][1000 genomes]
rs28408379	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28464338	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34064664	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35057631	0.81[ASN][1000 genomes]
rs35319444	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35406957	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35484532	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35823317	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36121385	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4397369	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4562281	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4565426	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4609165	0.87[ASN][1000 genomes]
rs4626563	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4733553	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58311093	0.84[ASN][1000 genomes]
rs6470753	0.80[ASN][1000 genomes]
rs6997969	0.84[ASN][1000 genomes]
rs6998156	0.84[ASN][1000 genomes]
rs6998279	0.84[ASN][1000 genomes]
rs6998547	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6998877	0.83[ASN][1000 genomes]
rs71522551	0.80[ASN][1000 genomes]
rs7828331	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841975	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130633000-130636800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links