Variant report

Variant	rs13256078
Chromosome Location	chr8:130639630-130639631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130632699..130634213-chr8:130638676..130640504,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10097823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10098045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12155665	0.84[ASN][1000 genomes]
rs12544799	0.92[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12545821	0.81[ASN][1000 genomes]
rs13249422	0.86[ASN][1000 genomes]
rs13249717	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13250002	0.84[ASN][1000 genomes]
rs13250085	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13252239	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs13258791	0.84[ASN][1000 genomes]
rs13263823	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs16904128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16904136	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16904138	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16904139	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28408379	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28464338	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28491539	0.81[ASN][1000 genomes]
rs34064664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34135752	0.81[ASN][1000 genomes]
rs34325696	0.81[ASN][1000 genomes]
rs34389024	0.82[ASN][1000 genomes]
rs34547718	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35057631	0.84[ASN][1000 genomes]
rs35319444	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35406957	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35484532	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35823317	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36121385	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4327829	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4397369	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4448234	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs4518628	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4562281	0.91[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4565426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566996	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4609165	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4626563	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4634602	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733553	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4733556	0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4733720	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs55719299	0.82[EUR][1000 genomes]
rs58311093	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6470753	0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6985166	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6987436	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6991966	0.81[ASN][1000 genomes]
rs6997969	0.80[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6998156	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6998279	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6998547	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6998877	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7006026	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs71522551	0.83[ASN][1000 genomes]
rs7812657	0.81[ASN][1000 genomes]
rs7814618	0.80[EUR][1000 genomes]
rs7819128	0.80[EUR][1000 genomes]
rs7828331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834911	0.80[EUR][1000 genomes]
rs7841975	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130636800-130651600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130638200-130647600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:130638600-130639800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:130638600-130642800	Enhancers	NHEK	skin
5	chr8:130638800-130640200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:130638800-130642800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:130639000-130639800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:130639400-130639800	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:130639400-130640200	Enhancers	Fetal Muscle Leg	muscle
10	chr8:130639400-130640400	Enhancers	K562	blood
11	chr8:130639400-130641400	Enhancers	Brain Germinal Matrix	brain
12	chr8:130639600-130640000	Bivalent Enhancer	Osteobl	bone
13	chr8:130639600-130640400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:130639600-130642600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:130639600-130642600	Enhancers	HMEC	breast

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