Variant report

Variant	rs36037322
Chromosome Location	chr10:96943194-96943195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:96943157-96943241	GM19240	blood:	n/a	chr10:96943180-96943190
2	MAX	chr10:96943055-96943788	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr10:96943073-96944018	GM18505	blood:	n/a	n/a
4	YY1	chr10:96942986-96943964	H1-hESC	embryonic stem cell:	n/a	chr10:96943334-96943348 chr10:96943334-96943343 chr10:96943351-96943365 chr10:96943338-96943352 chr10:96943337-96943346 chr10:96943337-96943351
5	CREB1	chr10:96943150-96943832	A549	lung:	n/a	n/a
6	POLR2A	chr10:96943032-96943595	H1-hESC	embryonic stem cell:	n/a	n/a
7	EBF1	chr10:96943179-96943658	GM12878	blood:	n/a	chr10:96943384-96943395
8	POLR2A	chr10:96943158-96943628	ECC-1	luminal epithelium:	n/a	n/a
9	CHD1	chr10:96943058-96943816	GM12878	blood:	n/a	n/a
10	POLR2A	chr10:96943140-96943734	A549	lung:	n/a	n/a
11	EP300	chr10:96943098-96943905	SK-N-SH	brain:	n/a	chr10:96943273-96943282 chr10:96943347-96943363 chr10:96943336-96943345
12	CEBPB	chr10:96943068-96943674	H1-hESC	embryonic stem cell:	n/a	n/a
13	TBL1XR1	chr10:96943153-96943786	GM12878	blood:	n/a	n/a
14	TAF1	chr10:96943072-96943720	SK-N-SH	brain:	n/a	n/a
15	CTCF	chr10:96943107-96943902	GM12878	blood:	n/a	chr10:96943180-96943190
16	POLR2A	chr10:96943112-96944113	GM12891	blood:	n/a	n/a
17	POLR2A	chr10:96943049-96944052	GM15510	blood:	n/a	n/a
18	POLR2A	chr10:96943101-96943905	GM12878	blood:	n/a	n/a
19	HMGN3	chr10:96943092-96944047	K562	blood:	n/a	n/a
20	POLR2A	chr10:96943059-96943834	A549	lung:	n/a	n/a
21	MYC	chr10:96942911-96943822	K562	blood:	n/a	n/a
22	MAX	chr10:96943009-96943919	ECC-1	luminal epithelium:	n/a	n/a
23	RUNX3	chr10:96943069-96944004	GM12878	blood:	n/a	n/a
24	MAZ	chr10:96943042-96943804	IMR90	lung:	n/a	n/a
25	E2F6	chr10:96943123-96944152	H1-hESC	embryonic stem cell:	n/a	chr10:96943335-96943345 chr10:96943252-96943261
26	POLR2A	chr10:96943147-96943952	GM12892	blood:	n/a	n/a
27	CTCF	chr10:96943180-96943266	Pancreas_OC	pancreas:	n/a	chr10:96943180-96943190
28	SMC3	chr10:96942789-96944223	SK-N-SH	brain:	n/a	n/a
29	POLR2A	chr10:96943164-96943867	K562	blood:	n/a	n/a
30	RAD21	chr10:96943047-96943800	IMR90	lung:	n/a	chr10:96943160-96943174 chr10:96943180-96943189
31	KAP1	chr10:96943111-96943896	HEK293	kidney:	n/a	n/a
32	ZBTB7A	chr10:96943094-96943598	K562	blood:	n/a	n/a
33	YY1	chr10:96943126-96943772	GM12878	blood:	n/a	chr10:96943334-96943348 chr10:96943334-96943343 chr10:96943351-96943365 chr10:96943338-96943352 chr10:96943337-96943346 chr10:96943337-96943351
34	CTCF	chr10:96942833-96944025	HCT-116	colon:	n/a	chr10:96943180-96943190
35	RAD21	chr10:96943051-96943963	H1-hESC	embryonic stem cell:	n/a	chr10:96943160-96943174 chr10:96943180-96943189
36	CTCF	chr10:96942817-96944132	A549	lung:	n/a	chr10:96943180-96943190
37	HCFC1	chr10:96943077-96943843	K562	blood:	n/a	n/a
38	CHD1	chr10:96942857-96943546	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr10:96943060-96943210	GM12864	blood:	n/a	chr10:96943180-96943190
40	GTF2F1	chr10:96943110-96943599	H1-hESC	embryonic stem cell:	n/a	n/a
41	ELF1	chr10:96942957-96944148	GM12878	blood:	n/a	chr10:96943334-96943343 chr10:96943338-96943350 chr10:96944118-96944129 chr10:96943335-96943347
42	ZBTB7A	chr10:96943012-96943815	ECC-1	luminal epithelium:	n/a	n/a
43	ZBTB7A	chr10:96943065-96943721	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr10:96943072-96943876	MCF-7	breast:	n/a	n/a
45	FOXM1	chr10:96943184-96943871	GM12878	blood:	n/a	n/a
46	POLR2A	chr10:96942999-96943863	PBDE	blood:	n/a	n/a
47	MYC	chr10:96942936-96943659	MCF10A-Er-Src	breast:	n/a	n/a
48	POLR2A	chr10:96943097-96943912	GM18951	blood:	n/a	n/a
49	MAX	chr10:96943106-96944027	H1-hESC	embryonic stem cell:	n/a	n/a
50	RAD21	chr10:96943056-96943949	HCT-116	colon:	n/a	chr10:96943160-96943174 chr10:96943180-96943189

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96941976..96944883-chr10:96989765..96992078,3	MCF-7	breast:

Variant related genes	Relation type
PAWRP1	TF binding region
ENSG00000234026	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10509681	1.00[ASN][1000 genomes]
rs11188124	1.00[ASN][1000 genomes]
rs11188148	1.00[ASN][1000 genomes]
rs11188153	1.00[ASN][1000 genomes]
rs11188154	1.00[ASN][1000 genomes]
rs11572064	1.00[ASN][1000 genomes]
rs11572080	1.00[ASN][1000 genomes]
rs11572082	1.00[ASN][1000 genomes]
rs11572094	1.00[ASN][1000 genomes]
rs11572107	1.00[ASN][1000 genomes]
rs11572116	1.00[ASN][1000 genomes]
rs11572128	1.00[ASN][1000 genomes]
rs11572150	1.00[ASN][1000 genomes]
rs11572168	1.00[ASN][1000 genomes]
rs11572169	1.00[ASN][1000 genomes]
rs11572174	1.00[ASN][1000 genomes]
rs11591385	1.00[ASN][1000 genomes]
rs11593816	1.00[ASN][1000 genomes]
rs11598823	1.00[ASN][1000 genomes]
rs12761249	1.00[ASN][1000 genomes]
rs12761315	1.00[ASN][1000 genomes]
rs12762602	1.00[ASN][1000 genomes]
rs12762652	1.00[ASN][1000 genomes]
rs12763201	1.00[ASN][1000 genomes]
rs12763939	1.00[ASN][1000 genomes]
rs12766965	1.00[ASN][1000 genomes]
rs12774244	1.00[ASN][1000 genomes]
rs12777852	1.00[ASN][1000 genomes]
rs12778481	1.00[ASN][1000 genomes]
rs12779007	1.00[ASN][1000 genomes]
rs12779339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780333	1.00[ASN][1000 genomes]
rs12784371	1.00[ASN][1000 genomes]
rs17452671	1.00[ASN][1000 genomes]
rs17452714	1.00[ASN][1000 genomes]
rs17453533	1.00[ASN][1000 genomes]
rs17523627	1.00[ASN][1000 genomes]
rs17524348	1.00[ASN][1000 genomes]
rs17525659	1.00[ASN][1000 genomes]
rs1934954	1.00[ASN][1000 genomes]
rs2185570	1.00[ASN][1000 genomes]
rs34031095	1.00[ASN][1000 genomes]
rs34119978	1.00[ASN][1000 genomes]
rs34246390	1.00[ASN][1000 genomes]
rs34254643	1.00[ASN][1000 genomes]
rs34320910	1.00[ASN][1000 genomes]
rs34409900	1.00[ASN][1000 genomes]
rs34462937	1.00[ASN][1000 genomes]
rs34729632	1.00[ASN][1000 genomes]
rs34883883	1.00[ASN][1000 genomes]
rs34949438	1.00[ASN][1000 genomes]
rs35203700	1.00[ASN][1000 genomes]
rs35213500	1.00[ASN][1000 genomes]
rs35238981	1.00[ASN][1000 genomes]
rs35432490	1.00[ASN][1000 genomes]
rs35461306	1.00[ASN][1000 genomes]
rs35598837	1.00[ASN][1000 genomes]
rs35883122	1.00[ASN][1000 genomes]
rs35955220	1.00[ASN][1000 genomes]
rs35998772	1.00[ASN][1000 genomes]
rs36042065	1.00[ASN][1000 genomes]
rs36168663	1.00[ASN][1000 genomes]
rs45457395	1.00[ASN][1000 genomes]
rs45523137	1.00[ASN][1000 genomes]
rs45535939	1.00[ASN][1000 genomes]
rs45546031	1.00[ASN][1000 genomes]
rs45601238	1.00[ASN][1000 genomes]
rs4607998	1.00[ASN][1000 genomes]
rs483239	1.00[ASN][1000 genomes]
rs4918795	1.00[ASN][1000 genomes]
rs507728	1.00[ASN][1000 genomes]
rs55753924	1.00[ASN][1000 genomes]
rs56028148	1.00[ASN][1000 genomes]
rs56408997	1.00[ASN][1000 genomes]
rs570849	1.00[ASN][1000 genomes]
rs595924	1.00[ASN][1000 genomes]
rs601746	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886802	1.00[ASN][1000 genomes]
rs623544	1.00[ASN][1000 genomes]
rs639937	1.00[ASN][1000 genomes]
rs659309	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66648066	1.00[ASN][1000 genomes]
rs66816038	1.00[ASN][1000 genomes]
rs670565	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67403627	1.00[ASN][1000 genomes]
rs67728892	1.00[ASN][1000 genomes]
rs67737822	1.00[ASN][1000 genomes]
rs67851687	1.00[ASN][1000 genomes]
rs67918795	1.00[ASN][1000 genomes]
rs682349	1.00[ASN][1000 genomes]
rs684203	1.00[ASN][1000 genomes]
rs686705	1.00[ASN][1000 genomes]
rs701889	1.00[ASN][1000 genomes]
rs7082506	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099702	1.00[ASN][1000 genomes]
rs71482344	1.00[ASN][1000 genomes]
rs71505737	1.00[ASN][1000 genomes]
rs72818651	1.00[ASN][1000 genomes]
rs72818652	1.00[ASN][1000 genomes]
rs72818673	1.00[ASN][1000 genomes]
rs72818680	1.00[ASN][1000 genomes]
rs72818681	1.00[ASN][1000 genomes]
rs72820645	1.00[ASN][1000 genomes]
rs9332216	1.00[ASN][1000 genomes]
rs9332222	1.00[ASN][1000 genomes]
rs9332242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96942000-96943800	Weak transcription	Fetal Lung	lung
2	chr10:96942000-96948200	Weak transcription	HepG2	liver
3	chr10:96942400-96943800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:96942400-96944000	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:96942400-96944200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr10:96942600-96943200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:96942600-96943600	Active TSS	H1 Cell Line	embryonic stem cell
8	chr10:96942600-96943600	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr10:96942600-96944000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr10:96942600-96944000	Active TSS	Liver	Liver
11	chr10:96942800-96943200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:96942800-96943200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:96942800-96943200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr10:96942800-96943200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr10:96942800-96943200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr10:96942800-96943200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:96942800-96943400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:96942800-96943400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr10:96942800-96943600	Active TSS	Primary B cells from cord blood	blood
20	chr10:96942800-96943600	Active TSS	Adipose Nuclei	Adipose
21	chr10:96942800-96943600	Active TSS	Fetal Muscle Trunk	muscle
22	chr10:96942800-96943600	Active TSS	Placenta	Placenta
23	chr10:96942800-96943600	Active TSS	Stomach Smooth Muscle	stomach
24	chr10:96942800-96943600	Active TSS	GM12878-XiMat	blood
25	chr10:96942800-96943600	Active TSS	HMEC	breast
26	chr10:96942800-96943600	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
27	chr10:96942800-96943800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr10:96942800-96943800	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr10:96942800-96943800	Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr10:96942800-96943800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:96942800-96943800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:96942800-96943800	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr10:96942800-96943800	Active TSS	Duodenum Mucosa	Duodenum
34	chr10:96942800-96943800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr10:96942800-96943800	Active TSS	Fetal Intestine Small	intestine
36	chr10:96942800-96943800	Active TSS	Fetal Kidney	kidney
37	chr10:96942800-96943800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
38	chr10:96942800-96943800	Active TSS	Fetal Stomach	stomach
39	chr10:96942800-96943800	Active TSS	Rectal Mucosa Donor 31	rectum
40	chr10:96942800-96943800	Active TSS	HSMMtube	muscle
41	chr10:96942800-96943800	Active TSS	K562	blood
42	chr10:96942800-96943800	Active TSS	NHDF-Ad	bronchial
43	chr10:96942800-96943800	Active TSS	NHEK	skin
44	chr10:96942800-96943800	Active TSS	NHLF	lung
45	chr10:96942800-96944000	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr10:96942800-96944000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:96942800-96944000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:96942800-96944000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:96942800-96944000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:96942800-96944000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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