Variant report

Variant	rs34254643
Chromosome Location	chr10:96882632-96882633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10509681	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188124	1.00[ASN][1000 genomes]
rs11188148	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188153	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188154	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572064	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572080	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572082	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572094	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572107	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572116	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572128	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572150	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572168	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572169	1.00[ASN][1000 genomes]
rs11572174	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11591385	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11593816	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11598823	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12761249	1.00[ASN][1000 genomes]
rs12761315	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762652	1.00[ASN][1000 genomes]
rs12763201	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763939	1.00[ASN][1000 genomes]
rs12766965	1.00[ASN][1000 genomes]
rs12774244	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12777852	1.00[ASN][1000 genomes]
rs12778481	1.00[ASN][1000 genomes]
rs12779007	1.00[ASN][1000 genomes]
rs12779339	1.00[ASN][1000 genomes]
rs12780333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784371	1.00[ASN][1000 genomes]
rs17443251	1.00[ASN][1000 genomes]
rs17452671	1.00[ASN][1000 genomes]
rs17452714	1.00[ASN][1000 genomes]
rs17453533	1.00[ASN][1000 genomes]
rs17523627	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17524348	1.00[ASN][1000 genomes]
rs17525659	1.00[ASN][1000 genomes]
rs1799853	1.00[ASN][1000 genomes]
rs1934954	1.00[ASN][1000 genomes]
rs1934966	1.00[ASN][1000 genomes]
rs2153629	1.00[ASN][1000 genomes]
rs2185570	1.00[ASN][1000 genomes]
rs2860968	1.00[ASN][1000 genomes]
rs34031095	1.00[ASN][1000 genomes]
rs34119978	1.00[ASN][1000 genomes]
rs34246390	1.00[ASN][1000 genomes]
rs34320910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409900	1.00[ASN][1000 genomes]
rs34462937	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34729632	1.00[ASN][1000 genomes]
rs34883883	1.00[ASN][1000 genomes]
rs34949438	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203700	1.00[ASN][1000 genomes]
rs35213500	1.00[ASN][1000 genomes]
rs35238981	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35432490	1.00[ASN][1000 genomes]
rs35461306	1.00[ASN][1000 genomes]
rs35598837	1.00[ASN][1000 genomes]
rs35883122	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35955220	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35998772	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037322	1.00[ASN][1000 genomes]
rs36042065	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36168663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980257	1.00[ASN][1000 genomes]
rs41291560	1.00[ASN][1000 genomes]
rs4351748	1.00[ASN][1000 genomes]
rs45457395	1.00[ASN][1000 genomes]
rs45523137	1.00[ASN][1000 genomes]
rs45535939	1.00[ASN][1000 genomes]
rs45546031	1.00[ASN][1000 genomes]
rs45601238	1.00[ASN][1000 genomes]
rs4607998	1.00[ASN][1000 genomes]
rs483239	1.00[ASN][1000 genomes]
rs4917636	1.00[ASN][1000 genomes]
rs4918795	1.00[ASN][1000 genomes]
rs507728	1.00[ASN][1000 genomes]
rs55753924	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56028148	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56044736	1.00[ASN][1000 genomes]
rs56380192	1.00[ASN][1000 genomes]
rs56408997	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs570849	1.00[ASN][1000 genomes]
rs595924	1.00[ASN][1000 genomes]
rs601746	1.00[ASN][1000 genomes]
rs61886771	1.00[ASN][1000 genomes]
rs61886773	1.00[ASN][1000 genomes]
rs61886796	1.00[ASN][1000 genomes]
rs61886797	1.00[ASN][1000 genomes]
rs61886802	1.00[ASN][1000 genomes]
rs623544	1.00[ASN][1000 genomes]
rs639937	1.00[ASN][1000 genomes]
rs659309	1.00[ASN][1000 genomes]
rs66648066	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66816038	1.00[ASN][1000 genomes]
rs670565	1.00[ASN][1000 genomes]
rs67403627	1.00[ASN][1000 genomes]
rs67728892	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67737822	1.00[ASN][1000 genomes]
rs67851687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67918795	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682349	1.00[ASN][1000 genomes]
rs684203	1.00[ASN][1000 genomes]
rs686705	1.00[ASN][1000 genomes]
rs701889	1.00[ASN][1000 genomes]
rs7082506	1.00[ASN][1000 genomes]
rs7099702	1.00[ASN][1000 genomes]
rs71482344	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71505737	1.00[ASN][1000 genomes]
rs72818651	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72818652	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72818673	1.00[ASN][1000 genomes]
rs72818680	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72818681	1.00[ASN][1000 genomes]
rs72820645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332100	1.00[ASN][1000 genomes]
rs9332101	1.00[ASN][1000 genomes]
rs9332102	1.00[ASN][1000 genomes]
rs9332119	1.00[ASN][1000 genomes]
rs9332155	1.00[ASN][1000 genomes]
rs9332163	1.00[ASN][1000 genomes]
rs9332179	1.00[ASN][1000 genomes]
rs9332216	1.00[ASN][1000 genomes]
rs9332222	1.00[ASN][1000 genomes]
rs9332242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1046150	chr10:96865081-96885334	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv551985	chr10:96870565-96920198	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96881000-96883400	Enhancers	HepG2	liver
2	chr10:96881600-96883400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:96881600-96883400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:96882000-96883400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:96882200-96883400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:96882400-96882800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:96882400-96889400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:96882600-96883200	Weak transcription	Liver	Liver

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