Variant report

Variant	rs67728892
Chromosome Location	chr10:96939173-96939174
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:96938370-96939398	HepG2	liver:	n/a	n/a
2	FOXA1	chr10:96938428-96939396	HepG2	liver:	n/a	n/a
3	BRCA1	chr10:96939156-96939188	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr10:96937774-96939218	HepG2	liver:	n/a	n/a
5	FOXA2	chr10:96939006-96939237	HepG2	liver:	n/a	n/a
6	FOXA2	chr10:96938130-96939345	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
PAWRP1	TF binding region

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10509681	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188124	1.00[ASN][1000 genomes]
rs11188148	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188153	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188154	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572064	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572080	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572082	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572094	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572107	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572116	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572128	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572150	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572168	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11572169	1.00[ASN][1000 genomes]
rs11572174	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11591385	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11593816	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11598823	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12761249	1.00[ASN][1000 genomes]
rs12761315	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762602	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762652	1.00[ASN][1000 genomes]
rs12763201	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763939	1.00[ASN][1000 genomes]
rs12766965	1.00[ASN][1000 genomes]
rs12774244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12777852	1.00[ASN][1000 genomes]
rs12778481	1.00[ASN][1000 genomes]
rs12779007	1.00[ASN][1000 genomes]
rs12779339	1.00[ASN][1000 genomes]
rs12780333	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784371	1.00[ASN][1000 genomes]
rs17452671	1.00[ASN][1000 genomes]
rs17452714	1.00[ASN][1000 genomes]
rs17453533	1.00[ASN][1000 genomes]
rs17523627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17524348	1.00[ASN][1000 genomes]
rs17525659	1.00[ASN][1000 genomes]
rs1934954	1.00[ASN][1000 genomes]
rs1934966	1.00[ASN][1000 genomes]
rs2153629	1.00[ASN][1000 genomes]
rs2185570	1.00[ASN][1000 genomes]
rs34031095	1.00[ASN][1000 genomes]
rs34119978	1.00[ASN][1000 genomes]
rs34246390	1.00[ASN][1000 genomes]
rs34254643	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34320910	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409900	1.00[ASN][1000 genomes]
rs34462937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34729632	1.00[ASN][1000 genomes]
rs34883883	1.00[ASN][1000 genomes]
rs34949438	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203700	1.00[ASN][1000 genomes]
rs35213500	1.00[ASN][1000 genomes]
rs35238981	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35432490	1.00[ASN][1000 genomes]
rs35461306	1.00[ASN][1000 genomes]
rs35598837	1.00[ASN][1000 genomes]
rs35883122	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35955220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35998772	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037322	1.00[ASN][1000 genomes]
rs36042065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36168663	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45457395	1.00[ASN][1000 genomes]
rs45523137	1.00[ASN][1000 genomes]
rs45535939	1.00[ASN][1000 genomes]
rs45546031	1.00[ASN][1000 genomes]
rs45601238	1.00[ASN][1000 genomes]
rs4607998	1.00[ASN][1000 genomes]
rs483239	1.00[ASN][1000 genomes]
rs4918795	1.00[ASN][1000 genomes]
rs507728	1.00[ASN][1000 genomes]
rs55753924	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56028148	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56408997	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs570849	1.00[ASN][1000 genomes]
rs595924	1.00[ASN][1000 genomes]
rs601746	1.00[ASN][1000 genomes]
rs61886802	1.00[ASN][1000 genomes]
rs623544	1.00[ASN][1000 genomes]
rs639937	1.00[ASN][1000 genomes]
rs659309	1.00[ASN][1000 genomes]
rs66648066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66816038	1.00[ASN][1000 genomes]
rs670565	1.00[ASN][1000 genomes]
rs67403627	1.00[ASN][1000 genomes]
rs67737822	1.00[ASN][1000 genomes]
rs67851687	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67918795	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682349	1.00[ASN][1000 genomes]
rs684203	1.00[ASN][1000 genomes]
rs686705	1.00[ASN][1000 genomes]
rs701889	1.00[ASN][1000 genomes]
rs7082506	1.00[ASN][1000 genomes]
rs7099702	1.00[ASN][1000 genomes]
rs71482344	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71505737	1.00[ASN][1000 genomes]
rs72818651	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72818652	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72818673	1.00[ASN][1000 genomes]
rs72818680	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72818681	1.00[ASN][1000 genomes]
rs72820645	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332216	1.00[ASN][1000 genomes]
rs9332222	1.00[ASN][1000 genomes]
rs9332242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96932000-96943000	Weak transcription	Pancreas	Pancrea
2	chr10:96932800-96941400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:96936600-96941400	Weak transcription	Fetal Intestine Small	intestine
4	chr10:96936800-96942400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:96937200-96942200	Enhancers	Liver	Liver
6	chr10:96937400-96940000	Enhancers	HepG2	liver
7	chr10:96938800-96939200	Enhancers	A549	lung
8	chr10:96939000-96942200	Weak transcription	Fetal Intestine Large	intestine

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