Variant report

Variant	rs36069680
Chromosome Location	chr10:112842961-112842962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56706993	1.00[AMR][1000 genomes]
rs57228376	1.00[AMR][1000 genomes]
rs57954412	1.00[AMR][1000 genomes]
rs6585035	1.00[AMR][1000 genomes]
rs6585036	1.00[AMR][1000 genomes]
rs7086272	1.00[AMR][1000 genomes]
rs7097209	1.00[AMR][1000 genomes]
rs73347769	1.00[AMR][1000 genomes]
rs73347774	1.00[AMR][1000 genomes]
rs73347789	1.00[AMR][1000 genomes]
rs73347799	1.00[AMR][1000 genomes]
rs73349707	1.00[AMR][1000 genomes]
rs73349714	1.00[AMR][1000 genomes]
rs73349721	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112838400-112847200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:112839400-112843400	Weak transcription	Spleen	Spleen
3	chr10:112839400-112848800	Weak transcription	Right Atrium	heart
4	chr10:112840400-112843000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:112840400-112844000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:112840400-112844400	Enhancers	Fetal Brain Male	brain
7	chr10:112841000-112846200	Enhancers	Adipose Nuclei	Adipose
8	chr10:112841200-112844000	Enhancers	Pancreas	Pancrea
9	chr10:112841800-112843000	Flanking Active TSS	Fetal Brain Female	brain
10	chr10:112842000-112843200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:112842000-112843400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:112842200-112843200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr10:112842200-112846800	Weak transcription	Stomach Mucosa	stomach
14	chr10:112842400-112843000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr10:112842400-112843000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:112842400-112843200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:112842400-112843200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:112842400-112843800	Enhancers	Placenta	Placenta
19	chr10:112842800-112844600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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