Variant report

Variant	rs57954412
Chromosome Location	chr10:112921484-112921485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs36069680	1.00[AMR][1000 genomes]
rs56706993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57228376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6585035	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6585036	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086272	1.00[AMR][1000 genomes]
rs7097209	1.00[AMR][1000 genomes]
rs73347769	1.00[AMR][1000 genomes]
rs73347774	1.00[AMR][1000 genomes]
rs73347789	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73347799	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv467456	chr10:112909105-112941780	Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv552173	chr10:112909105-112941780	Weak transcription Bivalent Enhancer Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1048286	chr10:112915770-113001105	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112921000-112921600	Enhancers	Fetal Muscle Leg	muscle
2	chr10:112921200-112922000	Enhancers	Colonic Mucosa	Colon
3	chr10:112921200-112922000	Enhancers	Spleen	Spleen
4	chr10:112921400-112922200	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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