Variant report

Variant	rs57228376
Chromosome Location	chr10:112905200-112905201
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs36069680	1.00[AMR][1000 genomes]
rs56706993	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57954412	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6585035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6585036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs68077731	0.83[AFR][1000 genomes]
rs68106015	0.85[AFR][1000 genomes]
rs7086272	1.00[AMR][1000 genomes]
rs7097209	1.00[AMR][1000 genomes]
rs73347769	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73347774	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73347789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73347799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349707	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349721	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs954385	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112898400-112907800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:112899800-112907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:112903000-112907800	Weak transcription	Pancreas	Pancrea
4	chr10:112905200-112906800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:112905200-112907000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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