Variant report

Variant	rs7097209
Chromosome Location	chr10:112878320-112878321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs36069680	1.00[AMR][1000 genomes]
rs56706993	1.00[AMR][1000 genomes]
rs57228376	1.00[AMR][1000 genomes]
rs57954412	1.00[AMR][1000 genomes]
rs6585035	1.00[AMR][1000 genomes]
rs6585036	1.00[AMR][1000 genomes]
rs7086272	1.00[AMR][1000 genomes]
rs73347769	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73347774	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73347789	1.00[AMR][1000 genomes]
rs73347799	1.00[AMR][1000 genomes]
rs73349707	1.00[AMR][1000 genomes]
rs73349714	1.00[AMR][1000 genomes]
rs73349721	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1796336	chr10:112848721-112878724	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112872600-112889200	Weak transcription	Pancreas	Pancrea
2	chr10:112874800-112878800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:112876200-112878600	Enhancers	Duodenum Mucosa	Duodenum
4	chr10:112877200-112886000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:112878000-112879400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:112878000-112887800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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