Variant report

Variant	rs361071
Chromosome Location	chr3:138487683-138487684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138486462..138487966-chr3:138494942..138497623,2	K562	blood:
2	chr3:138487034..138488882-chr3:138491067..138492739,2	K562	blood:

Variant related genes	Relation type
ENSG00000239207	Chromatin interaction

Extended variants
information (count: 182 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs1066197	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1068104	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1068685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10804658	1.00[CHB][hapmap]
rs11705762	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706016	0.92[CEU][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs11708762	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs11709768	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713049	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717457	0.90[EUR][1000 genomes]
rs11720178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924814	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631035	0.96[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap]
rs12633714	0.96[CEU][hapmap]
rs13061496	0.92[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs13069296	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13082808	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433948	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1400266	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1663554	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1663556	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1673597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1673607	0.81[MEX][hapmap]
rs168633	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs181729	0.92[EUR][1000 genomes]
rs187245	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191713	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2197387	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348147	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs244380	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs244381	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2595928	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2595930	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595932	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2607108	0.89[ASN][1000 genomes]
rs2607109	0.89[ASN][1000 genomes]
rs2607795	0.81[MEX][hapmap]
rs2607796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28376988	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408150	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs34900559	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35214574	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35926694	0.81[AMR][1000 genomes]
rs361054	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361055	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361056	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs361059	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs361062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361064	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361065	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361068	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361069	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs361072	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361073	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs361074	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs361075	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs361076	1.00[CHB][hapmap]
rs361077	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs361079	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361080	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361081	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361083	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361084	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361085	0.89[ASN][1000 genomes]
rs361087	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs361088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs361089	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs361092	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs361094	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361096	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361097	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs371762	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398065	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404110	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409507	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425901	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4305444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439720	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4405948	0.81[EUR][1000 genomes]
rs448808	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs470359	0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs473388	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475254	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs476800	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482334	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484698	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs4894350	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894351	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894352	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894353	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894354	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894359	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs491371	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs493152	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497900	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511207	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs520904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs523975	1.00[CHB][hapmap]
rs524164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs531577	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs537894	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap]
rs539156	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs539619	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540198	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540907	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs550768	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs558905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs559313	0.81[MEX][hapmap]
rs559451	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs564455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574942	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589986	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600590	0.88[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs601032	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs603723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs607044	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618457	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs621204	0.91[EUR][1000 genomes]
rs62282169	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs625468	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs635592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6439817	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439819	0.95[EUR][1000 genomes]
rs647972	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs654459	0.84[EUR][1000 genomes]
rs6773514	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6776585	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781914	0.89[EUR][1000 genomes]
rs6784610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs6794270	0.86[EUR][1000 genomes]
rs6795203	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6801207	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810351	0.97[EUR][1000 genomes]
rs7612106	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613579	0.96[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs7643722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650967	0.96[CEU][hapmap];1.00[CHD][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs772612	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs773045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs773184	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs811322	1.00[CHB][hapmap]
rs9289566	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs9647336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9647337	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs9818354	0.82[EUR][1000 genomes]
rs9821694	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823213	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9832012	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853819	0.94[EUR][1000 genomes]
rs9863481	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9864176	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874723	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877108	0.85[EUR][1000 genomes]
rs9879784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1013074	chr3:138213166-138737688	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1009726	chr3:138219923-138737688	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv869205	chr3:138248190-138775288	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv591854	chr3:138348081-138764229	Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1010514	chr3:138365640-138737688	Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv1000927	chr3:138423543-138632596	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv917964	chr3:138440701-138699084	Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs361071	CEP70	Cis_1M	lymphoblastoid	RTeQTL
rs361071	FAIM	cis	parietal	SCAN
rs361071	ESYT3	cis	cerebellum	SCAN
rs361071	PIK3CB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138369000-138493000	Weak transcription	Fetal Lung	lung
2	chr3:138393800-138515000	Weak transcription	Aorta	Aorta
3	chr3:138408400-138499200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:138460400-138493200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:138467600-138492800	Weak transcription	Fetal Heart	heart
6	chr3:138475400-138494200	Weak transcription	Psoas Muscle	Psoas
7	chr3:138476400-138494000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:138482800-138493000	Weak transcription	Right Atrium	heart
9	chr3:138483800-138492800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:138484200-138492600	Weak transcription	HMEC	breast
11	chr3:138484800-138493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:138485000-138492200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:138485600-138489000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr3:138485800-138489000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr3:138486000-138488200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:138486000-138488200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:138486000-138489000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr3:138486000-138489400	ZNF genes & repeats	Dnd41	blood
19	chr3:138486200-138488000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chr3:138486200-138488000	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr3:138486200-138488000	ZNF genes & repeats	Pancreas	Pancrea
22	chr3:138486200-138488000	ZNF genes & repeats	Thymus	Thymus
23	chr3:138486200-138488200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:138486200-138488200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:138486200-138488200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
26	chr3:138486200-138488200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:138486200-138488200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:138486200-138488200	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr3:138486200-138488200	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr3:138486200-138488200	ZNF genes & repeats	Fetal Stomach	stomach
31	chr3:138486200-138488200	ZNF genes & repeats	Fetal Thymus	thymus
32	chr3:138486200-138488400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:138486200-138488400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:138486200-138489000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
35	chr3:138486200-138489200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr3:138486200-138489200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr3:138486200-138491200	ZNF genes & repeats	K562	blood
38	chr3:138486400-138487800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr3:138486400-138488000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:138486400-138488000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
41	chr3:138486400-138488000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:138486400-138488000	ZNF genes & repeats	Esophagus	oesophagus
43	chr3:138486400-138488000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
44	chr3:138486400-138488000	ZNF genes & repeats	Fetal Brain Female	brain
45	chr3:138486400-138488000	ZNF genes & repeats	Lung	lung
46	chr3:138486400-138488000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr3:138486400-138488000	ZNF genes & repeats	Spleen	Spleen
48	chr3:138486400-138488000	ZNF genes & repeats	HSMM	muscle
49	chr3:138486400-138488000	ZNF genes & repeats	NHEK	skin
50	chr3:138486400-138488000	ZNF genes & repeats	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links