Variant report

Variant	rs361094
Chromosome Location	chr3:138388575-138388576
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138386996..138389793-chr3:138390548..138393262,2	MCF-7	breast:
2	chr3:138384417..138385991-chr3:138386689..138389539,2	MCF-7	breast:

Extended variants
information (count: 177 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1066197	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1068104	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1068685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10804658	1.00[CHB][hapmap]
rs1091528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11705762	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706016	0.92[CEU][hapmap]
rs11708762	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs11709768	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713049	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717457	0.85[EUR][1000 genomes]
rs11720178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924814	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631035	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs12633714	0.96[CEU][hapmap]
rs13061496	0.92[CEU][hapmap]
rs13069296	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13082808	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433948	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1400266	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1663554	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1663556	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1673597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs168633	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs181729	0.91[EUR][1000 genomes]
rs187245	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191713	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2197387	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348147	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs244380	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs244381	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2595928	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2595930	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595932	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2607108	0.89[ASN][1000 genomes]
rs2607109	0.89[ASN][1000 genomes]
rs2607796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28376988	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408150	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34900559	0.89[ASN][1000 genomes]
rs35214574	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361054	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361055	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361056	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs361059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs361062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361064	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361065	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361068	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361069	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs361071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361073	1.00[CHB][hapmap]
rs361074	1.00[CHB][hapmap]
rs361075	1.00[CHB][hapmap]
rs361076	1.00[CHB][hapmap]
rs361077	1.00[CHB][hapmap]
rs361079	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361081	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361083	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361084	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361085	0.89[ASN][1000 genomes]
rs361086	0.84[EUR][1000 genomes]
rs361087	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs361088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs361089	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs361092	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs361096	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361097	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs371762	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398065	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404110	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409507	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425901	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4305444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439720	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs448808	0.86[EUR][1000 genomes]
rs470359	0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs473388	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475254	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs476800	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482334	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484698	1.00[CHB][hapmap]
rs4894350	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894351	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894352	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894353	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894354	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894359	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs491371	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs493152	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511207	0.91[EUR][1000 genomes]
rs520904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs523975	1.00[CHB][hapmap]
rs524164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs531577	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs537894	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes]
rs539156	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs539619	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540198	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540907	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs550768	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs558905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs559451	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs564455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574942	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589986	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600590	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs601032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs603723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs607044	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618457	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs621204	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62282169	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs625468	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs635592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs643620	1.00[CHB][hapmap]
rs6439817	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439819	0.89[EUR][1000 genomes]
rs647972	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs654459	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6773514	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6776585	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781914	0.82[EUR][1000 genomes]
rs6784610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6794270	0.80[EUR][1000 genomes]
rs6795203	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6801207	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810351	0.90[EUR][1000 genomes]
rs7612106	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613579	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs7615854	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7643722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650967	0.96[CEU][hapmap]
rs772612	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs773045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs773184	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs811322	1.00[CHB][hapmap]
rs9289566	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs9647336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9647337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9821694	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823213	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9832012	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853819	0.88[EUR][1000 genomes]
rs9863481	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9864176	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874723	1.00[ASN][1000 genomes]
rs9879784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1013074	chr3:138213166-138737688	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1009726	chr3:138219923-138737688	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv869205	chr3:138248190-138775288	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv591854	chr3:138348081-138764229	Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1010514	chr3:138365640-138737688	Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs361094	CEP70	Cis_1M	lymphoblastoid	RTeQTL
rs361094	FAIM	cis	Muscle Skeletal	GTEx
rs361094	PIK3CB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138340400-138393800	Weak transcription	Fetal Brain Male	brain
2	chr3:138360800-138407600	Weak transcription	HUVEC	blood vessel
3	chr3:138364400-138459200	Weak transcription	Psoas Muscle	Psoas
4	chr3:138368800-138392400	Weak transcription	HMEC	breast
5	chr3:138368800-138400200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:138368800-138422600	Weak transcription	Right Atrium	heart
7	chr3:138369000-138390000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:138369000-138392400	Weak transcription	HSMM	muscle
9	chr3:138369000-138493000	Weak transcription	Fetal Lung	lung
10	chr3:138369200-138391800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:138369200-138393600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:138369200-138401600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:138369200-138412800	Weak transcription	Hela-S3	cervix
14	chr3:138369200-138428800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:138369200-138435600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:138369400-138392600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:138373000-138390400	Weak transcription	NH-A	brain
18	chr3:138374200-138390600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:138374400-138389400	Weak transcription	Fetal Heart	heart
20	chr3:138374800-138392200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:138374800-138397000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:138375200-138429000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:138377000-138392800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:138377000-138394200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:138377400-138390400	Weak transcription	Right Ventricle	heart
26	chr3:138381800-138389400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr3:138381800-138391200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:138381800-138394200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr3:138383000-138393600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr3:138383000-138395000	Weak transcription	Fetal Brain Female	brain
31	chr3:138383000-138404800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:138383200-138392000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:138383200-138392400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:138383200-138392600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:138383200-138392600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:138383200-138392600	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:138383200-138392600	Weak transcription	Thymus	Thymus
38	chr3:138383200-138393000	Weak transcription	Aorta	Aorta
39	chr3:138383200-138393000	Weak transcription	Esophagus	oesophagus
40	chr3:138383200-138393600	Weak transcription	Brain Germinal Matrix	brain
41	chr3:138383200-138393800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr3:138383200-138395400	Weak transcription	Colonic Mucosa	Colon
43	chr3:138383200-138412800	Weak transcription	Ovary	ovary
44	chr3:138383200-138448200	Weak transcription	Gastric	stomach
45	chr3:138383400-138390400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:138383400-138390400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:138383400-138393000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr3:138383400-138393000	Weak transcription	NHDF-Ad	bronchial
49	chr3:138383400-138393600	Weak transcription	A549	lung
50	chr3:138383400-138395000	Weak transcription	Brain Hippocampus Middle	brain

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