Variant report
| Variant | rs366113 |
|---|---|
| Chromosome Location | chr6:28031302-28031303 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28028745..28030518-chr6:28030810..28033569,2 | K562 | blood: | |
| 2 | chr6:27859494..27862107-chr6:28030841..28032990,2 | MCF-7 | breast: | |
| 3 | chr6:27853727..27855534-chr6:28030889..28032477,2 | MCF-7 | breast: | |
| 4 | chr6:28024259..28026067-chr6:28029908..28032132,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197153 | Chromatin interaction |
| ENSG00000233224 | Chromatin interaction |
| ENSG00000196331 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1150682 | 0.83[AMR][1000 genomes] |
| rs149854 | 1.00[AMR][1000 genomes] |
| rs149879 | 1.00[AMR][1000 genomes] |
| rs149898 | 0.83[AMR][1000 genomes] |
| rs156741 | 1.00[AMR][1000 genomes] |
| rs156742 | 1.00[AMR][1000 genomes] |
| rs1619221 | 0.83[AMR][1000 genomes] |
| rs175953 | 1.00[AMR][1000 genomes] |
| rs175955 | 0.83[AMR][1000 genomes] |
| rs1770132 | 0.83[AMR][1000 genomes] |
| rs183926 | 1.00[AMR][1000 genomes] |
| rs200962 | 1.00[AMR][1000 genomes] |
| rs203867 | 0.83[AMR][1000 genomes] |
| rs203874 | 0.83[AMR][1000 genomes] |
| rs2622318 | 0.83[AMR][1000 genomes] |
| rs276366 | 1.00[AMR][1000 genomes] |
| rs276367 | 1.00[AMR][1000 genomes] |
| rs276368 | 0.83[AMR][1000 genomes] |
| rs276372 | 0.83[AMR][1000 genomes] |
| rs425159 | 0.83[AMR][1000 genomes] |
| rs60554811 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs839777 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv883513 | chr6:27982152-28033087 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
