Variant report

Variant	rs1619221
Chromosome Location	chr6:28145202-28145203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28133761..28136004-chr6:28144085..28147042,3	K562	blood:
2	chr6:28144649..28146793-chr6:28148487..28151313,2	K562	blood:
3	chr6:27863620..27866470-chr6:28144337..28146765,2	K562	blood:
4	chr6:28143030..28145517-chr6:28186267..28188999,2	K562	blood:

Variant related genes	Relation type
ENSG00000176933	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000238610	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1150676	0.87[YRI][hapmap]
rs1150680	0.81[YRI][hapmap]
rs1150682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150683	0.92[YRI][hapmap]
rs1225593	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1237873	0.85[YRI][hapmap]
rs1416997	0.86[YRI][hapmap]
rs1480646	0.87[YRI][hapmap]
rs149898	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs149957	0.92[YRI][hapmap]
rs156741	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs156742	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1613149	0.85[YRI][hapmap]
rs169432	0.86[YRI][hapmap]
rs169433	0.92[YRI][hapmap]
rs172164	0.92[YRI][hapmap]
rs175953	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs175955	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770130	0.86[YRI][hapmap]
rs1770132	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs183926	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871695	0.92[YRI][hapmap]
rs203865	0.87[YRI][hapmap]
rs203867	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs203870	0.87[YRI][hapmap]
rs203874	0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs203885	0.92[YRI][hapmap]
rs203894	0.87[YRI][hapmap]
rs2622318	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2622321	0.87[YRI][hapmap]
rs276366	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276367	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2791334	0.87[YRI][hapmap]
rs34223404	1.00[EUR][1000 genomes]
rs366113	0.83[AMR][1000 genomes]
rs425159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs427348	0.92[YRI][hapmap]
rs539474	0.92[YRI][hapmap]
rs55826226	1.00[EUR][1000 genomes]
rs57481919	1.00[EUR][1000 genomes]
rs60005089	1.00[EUR][1000 genomes]
rs60554811	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740585	1.00[EUR][1000 genomes]
rs73740597	1.00[EUR][1000 genomes]
rs73740600	1.00[EUR][1000 genomes]
rs73740605	1.00[EUR][1000 genomes]
rs73742514	1.00[EUR][1000 genomes]
rs73742515	1.00[EUR][1000 genomes]
rs73742531	1.00[EUR][1000 genomes]
rs73742537	1.00[EUR][1000 genomes]
rs839777	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348795	0.92[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1619221	Hs.158943	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
2	chr6:28138000-28145600	Weak transcription	K562	blood
3	chr6:28139400-28145600	Weak transcription	Brain Inferior Temporal Lobe	brain

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