Variant report

Variant	rs73740597
Chromosome Location	chr6:28204159-28204160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28202355..28207419-chr6:28302691..28306303,4	K562	blood:
2	chr6:28201636..28204164-chr6:28301226..28303340,2	K562	blood:
3	chr6:28201634..28205338-chr6:28303433..28306544,4	K562	blood:
4	chr6:28202226..28208942-chr6:28209296..28217649,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1150682	1.00[EUR][1000 genomes]
rs1225593	1.00[EUR][1000 genomes]
rs156741	1.00[EUR][1000 genomes]
rs156742	1.00[EUR][1000 genomes]
rs1619221	1.00[EUR][1000 genomes]
rs175953	1.00[EUR][1000 genomes]
rs175955	1.00[EUR][1000 genomes]
rs1770132	1.00[EUR][1000 genomes]
rs183926	1.00[EUR][1000 genomes]
rs203867	1.00[EUR][1000 genomes]
rs203874	1.00[EUR][1000 genomes]
rs2622318	1.00[EUR][1000 genomes]
rs34223404	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55826226	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57481919	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60005089	1.00[EUR][1000 genomes]
rs60554811	1.00[EUR][1000 genomes]
rs73740585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740605	1.00[EUR][1000 genomes]
rs73740628	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73740636	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73742514	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73742515	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73742531	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73742537	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28193600-28213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:28193800-28211800	Weak transcription	Fetal Thymus	thymus
3	chr6:28193800-28218400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:28193800-28218400	Weak transcription	Stomach Mucosa	stomach
5	chr6:28194000-28211000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:28194000-28211800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:28194000-28212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:28194000-28213000	Weak transcription	Thymus	Thymus
9	chr6:28194000-28213600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:28194600-28207000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:28194800-28204200	Strong transcription	Left Ventricle	heart
12	chr6:28194800-28205000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:28195200-28204600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:28195400-28204600	Strong transcription	Placenta	Placenta
15	chr6:28196800-28212400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:28196800-28212400	Weak transcription	Small Intestine	intestine
17	chr6:28196800-28213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:28197000-28212400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:28198800-28212200	Weak transcription	Hela-S3	cervix
20	chr6:28199200-28213200	Weak transcription	Colonic Mucosa	Colon
21	chr6:28199800-28213600	Weak transcription	NHDF-Ad	bronchial
22	chr6:28200400-28212400	Weak transcription	Fetal Intestine Small	intestine
23	chr6:28200400-28212600	Weak transcription	NHEK	skin
24	chr6:28200800-28212400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:28200800-28212600	Weak transcription	Fetal Heart	heart
26	chr6:28201000-28206400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:28201000-28211000	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:28201000-28211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:28201000-28212200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:28201000-28212200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:28201000-28212400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:28201000-28212400	Weak transcription	HMEC	breast
33	chr6:28201000-28212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:28201000-28212800	Weak transcription	Pancreas	Pancrea
35	chr6:28201000-28212800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:28201000-28212800	Weak transcription	Right Ventricle	heart
37	chr6:28201200-28206000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:28201200-28206400	Weak transcription	Ovary	ovary
39	chr6:28201200-28212200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:28201400-28206200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:28201600-28206400	Weak transcription	Lung	lung
42	chr6:28201600-28211600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:28201600-28211800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:28201600-28212000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:28201600-28212400	Weak transcription	Esophagus	oesophagus
46	chr6:28201600-28212600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:28201600-28212600	Weak transcription	Brain Angular Gyrus	brain
48	chr6:28201600-28212600	Weak transcription	Fetal Brain Male	brain
49	chr6:28201600-28212800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:28201600-28212800	Weak transcription	Gastric	stomach

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