Variant report
| Variant | rs1150682 |
|---|---|
| Chromosome Location | chr6:28154996-28154997 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28103112..28105781-chr6:28154493..28156297,2 | MCF-7 | breast: | |
| 2 | chr6:27859569..27861636-chr6:28153464..28155935,2 | K562 | blood: | |
| 3 | chr6:28153153..28155076-chr6:28188462..28190523,2 | K562 | blood: | |
| 4 | chr6:28133526..28135723-chr6:28152617..28155102,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ZNF192P2 | TF binding region |
| ENSG00000226314 | Chromatin interaction |
| ENSG00000196331 | Chromatin interaction |
| ENSG00000261839 | Chromatin interaction |
| ENSG00000197153 | Chromatin interaction |
| ENSG00000233224 | Chromatin interaction |
| ENSG00000269293 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1225593 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs149898 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs156741 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs156742 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1619221 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs175953 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs175955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1770132 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs183926 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs203867 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs203874 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2622318 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs276366 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs276367 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs276368 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs276372 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34223404 | 1.00[EUR][1000 genomes] |
| rs366113 | 0.83[AMR][1000 genomes] |
| rs55826226 | 1.00[EUR][1000 genomes] |
| rs57481919 | 1.00[EUR][1000 genomes] |
| rs60005089 | 1.00[EUR][1000 genomes] |
| rs60554811 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73740585 | 1.00[EUR][1000 genomes] |
| rs73740597 | 1.00[EUR][1000 genomes] |
| rs73740600 | 1.00[EUR][1000 genomes] |
| rs73740605 | 1.00[EUR][1000 genomes] |
| rs73742514 | 1.00[EUR][1000 genomes] |
| rs73742515 | 1.00[EUR][1000 genomes] |
| rs73742531 | 1.00[EUR][1000 genomes] |
| rs73742537 | 1.00[EUR][1000 genomes] |
| rs839777 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28151800-28155200 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
