Variant report

Variant	rs183926
Chromosome Location	chr6:28003271-28003272
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27999731..28002112-chr6:28002900..28005116,2	MCF-7	breast:
2	chr6:28001746..28003374-chr6:28020491..28023392,2	K562	blood:

Variant related genes	Relation type
ENSG00000217315	Chromatin interaction
ENSG00000182477	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1150682	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1225593	1.00[EUR][1000 genomes]
rs149854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs149879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs149898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs156741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs156742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1619221	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs169263	1.00[EUR][1000 genomes]
rs175953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs175955	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770132	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs200962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs200970	1.00[EUR][1000 genomes]
rs203867	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs203874	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2200870	1.00[EUR][1000 genomes]
rs2622318	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276368	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276372	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs366113	1.00[AMR][1000 genomes]
rs425159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56262840	1.00[EUR][1000 genomes]
rs56366090	1.00[EUR][1000 genomes]
rs57481919	1.00[EUR][1000 genomes]
rs58700542	1.00[EUR][1000 genomes]
rs60554811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740585	1.00[EUR][1000 genomes]
rs73740597	1.00[EUR][1000 genomes]
rs73740600	1.00[EUR][1000 genomes]
rs73740842	1.00[EUR][1000 genomes]
rs839777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv883513	chr6:27982152-28033087	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv1817841	chr6:27984907-28007435	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv981052	chr6:27987196-28024382	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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