Variant report

Variant	rs2622318
Chromosome Location	chr6:28119886-28119887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27859225..27860749-chr6:28117947..28120054,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1150676	0.92[YRI][hapmap]
rs1150680	0.86[YRI][hapmap]
rs1150682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150683	0.92[YRI][hapmap]
rs1225593	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1237873	0.85[YRI][hapmap]
rs1416997	0.92[YRI][hapmap]
rs1480646	0.92[YRI][hapmap]
rs149854	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs149879	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs149898	0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs149957	0.92[YRI][hapmap]
rs156741	1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs156742	1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1613149	0.91[YRI][hapmap]
rs1619221	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs169432	0.92[YRI][hapmap]
rs169433	0.92[YRI][hapmap]
rs172164	0.92[YRI][hapmap]
rs175953	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs175955	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770130	0.92[YRI][hapmap]
rs1770132	0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs183926	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871695	0.92[YRI][hapmap]
rs200962	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs203865	0.92[YRI][hapmap]
rs203867	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs203870	0.92[YRI][hapmap]
rs203874	0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs203885	0.92[YRI][hapmap]
rs203894	0.92[YRI][hapmap]
rs2622321	0.92[YRI][hapmap]
rs276363	1.00[MEX][hapmap]
rs276364	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs276366	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276367	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2791334	0.92[YRI][hapmap]
rs34223404	1.00[EUR][1000 genomes]
rs366113	0.83[AMR][1000 genomes]
rs425159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs427348	0.92[YRI][hapmap]
rs539474	0.92[YRI][hapmap]
rs57481919	1.00[EUR][1000 genomes]
rs60005089	1.00[EUR][1000 genomes]
rs60554811	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740585	1.00[EUR][1000 genomes]
rs73740597	1.00[EUR][1000 genomes]
rs73740600	1.00[EUR][1000 genomes]
rs73742514	1.00[EUR][1000 genomes]
rs73742515	1.00[EUR][1000 genomes]
rs73742531	1.00[EUR][1000 genomes]
rs73742537	1.00[EUR][1000 genomes]
rs839777	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348795	0.92[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2622318	Hs.158943	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28110200-28120800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28111000-28120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:28111400-28129200	Weak transcription	Right Atrium	heart
4	chr6:28111600-28121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:28111800-28121200	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:28111800-28127000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:28112000-28120400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:28112000-28120600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr6:28112000-28120800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:28112000-28120800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:28112000-28121000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:28112000-28121200	Strong transcription	Fetal Thymus	thymus
13	chr6:28112000-28123600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:28112000-28124800	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr6:28112000-28126600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:28112400-28124800	Strong transcription	HepG2	liver
17	chr6:28113200-28127200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:28113400-28124000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:28113800-28124600	Strong transcription	Dnd41	blood
20	chr6:28113800-28125600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:28114000-28120000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:28115200-28120400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:28115200-28123600	Strong transcription	NHEK	skin
24	chr6:28115200-28125800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:28115200-28127200	Strong transcription	Fetal Brain Female	brain
26	chr6:28115400-28120400	Strong transcription	NHLF	lung
27	chr6:28115400-28120800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:28115400-28121000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr6:28115400-28121000	Strong transcription	Fetal Kidney	kidney
30	chr6:28115400-28123000	Strong transcription	Rectal Smooth Muscle	rectum
31	chr6:28115400-28123800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:28115400-28124400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:28115400-28124600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:28115400-28124600	Strong transcription	NHDF-Ad	bronchial
35	chr6:28115400-28124800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:28115400-28125000	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr6:28115400-28125000	Strong transcription	Brain Germinal Matrix	brain
38	chr6:28115400-28125200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:28115400-28125200	Strong transcription	Fetal Intestine Large	intestine
40	chr6:28115400-28125200	Strong transcription	Fetal Muscle Leg	muscle
41	chr6:28115400-28125400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:28115400-28125400	Strong transcription	Ovary	ovary
43	chr6:28115400-28126600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:28115400-28127000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:28115400-28127000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr6:28115600-28120600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:28115600-28120800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr6:28115600-28122200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:28115600-28122200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:28115600-28123000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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