Variant report
| Variant | rs73740605 |
|---|---|
| Chromosome Location | chr6:28370349-28370350 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28364231..28371937-chr6:28372195..28378158,17 | K562 | blood: | |
| 2 | chr6:28174164..28176650-chr6:28369447..28371283,2 | K562 | blood: | |
| 3 | chr6:28369764..28371489-chr6:28380154..28383821,4 | K562 | blood: | |
| 4 | chr6:28302778..28306478-chr6:28369638..28373643,3 | K562 | blood: | |
| 5 | chr6:28368732..28370579-chr6:28448178..28450277,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235109 | Chromatin interaction |
| ENSG00000251877 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs1150682 | 1.00[EUR][1000 genomes] |
| rs1225593 | 1.00[EUR][1000 genomes] |
| rs1619221 | 1.00[EUR][1000 genomes] |
| rs34223404 | 1.00[EUR][1000 genomes] |
| rs34626566 | 1.00[AMR][1000 genomes] |
| rs35783771 | 1.00[AMR][1000 genomes] |
| rs4441948 | 1.00[AMR][1000 genomes] |
| rs55826226 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56100858 | 1.00[AMR][1000 genomes] |
| rs56208653 | 0.92[AMR][1000 genomes] |
| rs56364512 | 1.00[AMR][1000 genomes] |
| rs56958472 | 0.92[AMR][1000 genomes] |
| rs57481919 | 1.00[EUR][1000 genomes] |
| rs57672617 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58172306 | 1.00[AMR][1000 genomes] |
| rs58341861 | 1.00[AMR][1000 genomes] |
| rs59834324 | 1.00[AMR][1000 genomes] |
| rs60005089 | 1.00[EUR][1000 genomes] |
| rs60661227 | 1.00[AMR][1000 genomes] |
| rs73740585 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73740597 | 1.00[EUR][1000 genomes] |
| rs73740600 | 1.00[EUR][1000 genomes] |
| rs73740628 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73740636 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73740738 | 1.00[AMR][1000 genomes] |
| rs73740740 | 1.00[AMR][1000 genomes] |
| rs73740741 | 1.00[AMR][1000 genomes] |
| rs73740742 | 1.00[AMR][1000 genomes] |
| rs73740744 | 1.00[AMR][1000 genomes] |
| rs73740745 | 1.00[AMR][1000 genomes] |
| rs73740968 | 1.00[AMR][1000 genomes] |
| rs73742514 | 1.00[EUR][1000 genomes] |
| rs73742515 | 1.00[EUR][1000 genomes] |
| rs73742531 | 1.00[EUR][1000 genomes] |
| rs73742537 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73742927 | 1.00[AMR][1000 genomes] |
| rs73742928 | 1.00[AMR][1000 genomes] |
| rs73742929 | 1.00[AMR][1000 genomes] |
| rs73742930 | 1.00[AMR][1000 genomes] |
| rs73742931 | 1.00[AMR][1000 genomes] |
| rs73742932 | 1.00[AMR][1000 genomes] |
| rs73743506 | 0.92[AMR][1000 genomes] |
| rs73743507 | 0.92[AMR][1000 genomes] |
| rs73743508 | 1.00[AMR][1000 genomes] |
| rs73743510 | 1.00[AMR][1000 genomes] |
| rs73743511 | 1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28368000-28370800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr6:28368600-28371200 | Enhancers | K562 | blood |
