Variant report

Variant	rs73740741
Chromosome Location	chr6:28537378-28537379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28535055..28538009-chr6:28541570..28543876,2	K562	blood:
2	chr6:28508074..28513880-chr6:28531341..28537609,9	K562	blood:
3	chr6:28536151..28541638-chr6:28552777..28557302,5	MCF-7	breast:
4	chr6:28532871..28537837-chr6:28545273..28547393,5	K562	blood:
5	chr6:28529471..28535442-chr6:28536902..28541186,7	K562	blood:

Variant related genes	Relation type
ENSG00000246350	Chromatin interaction
ENSG00000232040	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs16894180	1.00[AMR][1000 genomes]
rs16894183	1.00[AMR][1000 genomes]
rs16894218	1.00[AMR][1000 genomes]
rs34626566	1.00[AMR][1000 genomes]
rs35783771	1.00[AMR][1000 genomes]
rs4441948	1.00[AMR][1000 genomes]
rs55826226	1.00[AMR][1000 genomes]
rs55906309	1.00[AMR][1000 genomes]
rs56100858	1.00[AMR][1000 genomes]
rs56127972	0.85[AMR][1000 genomes]
rs56208653	0.92[AMR][1000 genomes]
rs56364512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56958472	0.92[AMR][1000 genomes]
rs57672617	1.00[AMR][1000 genomes]
rs58172306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58341861	1.00[AMR][1000 genomes]
rs59109668	1.00[AMR][1000 genomes]
rs59834324	1.00[AMR][1000 genomes]
rs60661227	1.00[AMR][1000 genomes]
rs73740605	1.00[AMR][1000 genomes]
rs73740628	1.00[AMR][1000 genomes]
rs73740636	1.00[AMR][1000 genomes]
rs73740738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740742	1.00[AMR][1000 genomes]
rs73740744	1.00[AMR][1000 genomes]
rs73740745	1.00[AMR][1000 genomes]
rs73740968	1.00[AMR][1000 genomes]
rs73742927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743506	0.92[AMR][1000 genomes]
rs73743507	0.92[AMR][1000 genomes]
rs73743508	1.00[AMR][1000 genomes]
rs73743510	1.00[AMR][1000 genomes]
rs73743511	1.00[AMR][1000 genomes]
rs73744130	1.00[AMR][1000 genomes]
rs73744134	1.00[AMR][1000 genomes]
rs73744135	1.00[AMR][1000 genomes]
rs73744136	1.00[AMR][1000 genomes]
rs73744140	1.00[AMR][1000 genomes]
rs73744141	1.00[AMR][1000 genomes]
rs963937	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28531800-28553200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:28532000-28552600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:28534400-28537400	Enhancers	K562	blood
4	chr6:28534400-28543200	Weak transcription	Liver	Liver
5	chr6:28535000-28554000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:28535400-28537400	Weak transcription	A549	lung
7	chr6:28536600-28553200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:28536800-28540000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:28537200-28540800	Weak transcription	Fetal Brain Female	brain
10	chr6:28537200-28542200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:28537200-28543800	Weak transcription	GM12878-XiMat	blood
12	chr6:28537200-28553200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:28537200-28554000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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