Variant report

Variant	rs57672617
Chromosome Location	chr6:28449501-28449502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28364005..28367844-chr6:28444304..28449588,6	K562	blood:
2	chr6:28368732..28370579-chr6:28448178..28450277,2	K562	blood:
3	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
4	chr6:27100692..27102905-chr6:28448028..28449823,2	K562	blood:
5	chr6:28361885..28364070-chr6:28448691..28451219,2	K562	blood:
6	chr6:27100850..27102905-chr6:28448028..28449687,2	K562	blood:
7	chr6:28446745..28449657-chr6:28455146..28458037,3	MCF-7	breast:
8	chr6:28429774..28433738-chr6:28446930..28450436,3	K562	blood:
9	chr6:28432238..28433999-chr6:28448151..28450436,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs16894180	1.00[AMR][1000 genomes]
rs16894183	1.00[AMR][1000 genomes]
rs16894218	1.00[AMR][1000 genomes]
rs34223404	1.00[EUR][1000 genomes]
rs34626566	1.00[AMR][1000 genomes]
rs35783771	1.00[AMR][1000 genomes]
rs4441948	1.00[AMR][1000 genomes]
rs55826226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55906309	1.00[AMR][1000 genomes]
rs56100858	1.00[AMR][1000 genomes]
rs56127972	0.85[AMR][1000 genomes]
rs56208653	0.92[AMR][1000 genomes]
rs56364512	1.00[AMR][1000 genomes]
rs56958472	0.92[AMR][1000 genomes]
rs57481919	1.00[EUR][1000 genomes]
rs58172306	1.00[AMR][1000 genomes]
rs58341861	1.00[AMR][1000 genomes]
rs59109668	1.00[AMR][1000 genomes]
rs59834324	1.00[AMR][1000 genomes]
rs60005089	1.00[EUR][1000 genomes]
rs60661227	1.00[AMR][1000 genomes]
rs73740605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740738	1.00[AMR][1000 genomes]
rs73740740	1.00[AMR][1000 genomes]
rs73740741	1.00[AMR][1000 genomes]
rs73740742	1.00[AMR][1000 genomes]
rs73740744	1.00[AMR][1000 genomes]
rs73740745	1.00[AMR][1000 genomes]
rs73740968	1.00[AMR][1000 genomes]
rs73742514	1.00[EUR][1000 genomes]
rs73742515	1.00[EUR][1000 genomes]
rs73742531	1.00[EUR][1000 genomes]
rs73742537	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73742927	1.00[AMR][1000 genomes]
rs73742928	1.00[AMR][1000 genomes]
rs73742929	1.00[AMR][1000 genomes]
rs73742930	1.00[AMR][1000 genomes]
rs73742931	1.00[AMR][1000 genomes]
rs73742932	1.00[AMR][1000 genomes]
rs73743506	0.92[AMR][1000 genomes]
rs73743507	0.92[AMR][1000 genomes]
rs73743508	1.00[AMR][1000 genomes]
rs73743510	1.00[AMR][1000 genomes]
rs73743511	1.00[AMR][1000 genomes]
rs73744130	1.00[AMR][1000 genomes]
rs73744134	1.00[AMR][1000 genomes]
rs73744135	1.00[AMR][1000 genomes]
rs73744136	1.00[AMR][1000 genomes]
rs73744140	1.00[AMR][1000 genomes]
rs73744141	1.00[AMR][1000 genomes]
rs963937	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28448800-28450800	Enhancers	K562	blood

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