Variant report

Variant	rs56127972
Chromosome Location	chr6:28658737-28658738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28654705..28657385-chr6:28657987..28660967,2	K562	blood:
2	chr6:28655903..28659289-chr6:28687482..28691877,5	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs16894180	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894183	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894218	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34626566	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35783771	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4441948	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55906309	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56100858	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56208653	1.00[EUR][1000 genomes]
rs56364512	0.85[AMR][1000 genomes]
rs56958472	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57672617	0.85[AMR][1000 genomes]
rs58172306	0.85[AMR][1000 genomes]
rs58341861	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59109668	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59834324	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60661227	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740628	0.85[AMR][1000 genomes]
rs73740636	0.85[AMR][1000 genomes]
rs73740738	0.85[AMR][1000 genomes]
rs73740740	0.85[AMR][1000 genomes]
rs73740741	0.85[AMR][1000 genomes]
rs73740742	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740744	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740745	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740747	0.83[AFR][1000 genomes]
rs73740968	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742927	0.85[AMR][1000 genomes]
rs73742928	0.85[AMR][1000 genomes]
rs73742929	0.85[AMR][1000 genomes]
rs73742930	0.85[AMR][1000 genomes]
rs73742931	0.85[AMR][1000 genomes]
rs73742932	0.85[AMR][1000 genomes]
rs73743506	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73743507	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73743508	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743510	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743511	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744130	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744134	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744135	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744136	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744140	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744141	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963937	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28654200-28663600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28654400-28660000	Weak transcription	NHEK	skin
3	chr6:28655400-28660400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:28655600-28659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:28658200-28667400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links