Variant report

Variant	rs73742927
Chromosome Location	chr6:28508652-28508653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28508365..28512579-chr6:28582414..28584502,4	K562	blood:
2	chr6:28508469..28511332-chr6:28520528..28524271,3	K562	blood:
3	chr6:28508315..28510538-chr6:28538499..28540306,2	K562	blood:
4	chr6:28499347..28503956-chr6:28505758..28508912,7	K562	blood:
5	chr6:28508033..28510404-chr6:28569688..28571958,2	K562	blood:
6	chr6:28508020..28511004-chr6:28575052..28576613,2	K562	blood:
7	chr6:28508074..28513880-chr6:28531341..28537609,9	K562	blood:
8	chr6:28507775..28510636-chr6:28641558..28643450,2	K562	blood:
9	chr6:28508618..28512579-chr6:28580487..28584134,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs16894180	1.00[AMR][1000 genomes]
rs16894183	1.00[AMR][1000 genomes]
rs16894218	1.00[AMR][1000 genomes]
rs34626566	1.00[AMR][1000 genomes]
rs35783771	1.00[AMR][1000 genomes]
rs4441948	1.00[AMR][1000 genomes]
rs55826226	1.00[AMR][1000 genomes]
rs55906309	1.00[AMR][1000 genomes]
rs56100858	1.00[AMR][1000 genomes]
rs56127972	0.85[AMR][1000 genomes]
rs56208653	0.92[AMR][1000 genomes]
rs56364512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56958472	0.92[AMR][1000 genomes]
rs57672617	1.00[AMR][1000 genomes]
rs58172306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58341861	1.00[AMR][1000 genomes]
rs59109668	1.00[AMR][1000 genomes]
rs59834324	1.00[AMR][1000 genomes]
rs60661227	1.00[AMR][1000 genomes]
rs73740605	1.00[AMR][1000 genomes]
rs73740628	1.00[AMR][1000 genomes]
rs73740636	1.00[AMR][1000 genomes]
rs73740738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740742	1.00[AMR][1000 genomes]
rs73740744	1.00[AMR][1000 genomes]
rs73740745	1.00[AMR][1000 genomes]
rs73740968	1.00[AMR][1000 genomes]
rs73742928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743506	0.92[AMR][1000 genomes]
rs73743507	0.92[AMR][1000 genomes]
rs73743508	1.00[AMR][1000 genomes]
rs73743510	1.00[AMR][1000 genomes]
rs73743511	1.00[AMR][1000 genomes]
rs73744130	1.00[AMR][1000 genomes]
rs73744134	1.00[AMR][1000 genomes]
rs73744135	1.00[AMR][1000 genomes]
rs73744136	1.00[AMR][1000 genomes]
rs73744140	1.00[AMR][1000 genomes]
rs73744141	1.00[AMR][1000 genomes]
rs963937	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv435838	chr6:28507880-28514263	Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28504000-28509800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:28505200-28510200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:28506000-28510000	Weak transcription	Placenta	Placenta
4	chr6:28506000-28510200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28506200-28509200	Weak transcription	K562	blood
6	chr6:28506400-28510200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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