Variant report

Variant	rs73744136
Chromosome Location	chr6:28654317-28654318
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28654267..28654878-chr6:28984477..28985170,2	MCF-7	breast:
2	chr6:28653494..28655426-chr6:28676429..28678090,2	K562	blood:
3	chr6:28653833..28655870-chr6:28666248..28668111,2	K562	blood:
4	chr6:27862359..27864644-chr6:28653180..28655557,2	K562	blood:
5	chr6:27861212..27864644-chr6:28652943..28655557,3	K562	blood:
6	chr6:28646207..28648515-chr6:28654063..28655846,3	K562	blood:
7	chr6:28361480..28362110-chr6:28653554..28654437,2	K562	blood:
8	chr6:28654200..28654700-chr6:29556957..29557918,2	K562	blood:

No data

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs16894180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34626566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35783771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4441948	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55906309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56100858	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56127972	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56208653	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56364512	1.00[AMR][1000 genomes]
rs56958472	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57672617	1.00[AMR][1000 genomes]
rs58172306	1.00[AMR][1000 genomes]
rs58341861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59109668	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59834324	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60661227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740628	1.00[AMR][1000 genomes]
rs73740636	1.00[AMR][1000 genomes]
rs73740738	1.00[AMR][1000 genomes]
rs73740740	1.00[AMR][1000 genomes]
rs73740741	1.00[AMR][1000 genomes]
rs73740742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740744	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740745	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740747	0.83[AFR][1000 genomes]
rs73740968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742927	1.00[AMR][1000 genomes]
rs73742928	1.00[AMR][1000 genomes]
rs73742929	1.00[AMR][1000 genomes]
rs73742930	1.00[AMR][1000 genomes]
rs73742931	1.00[AMR][1000 genomes]
rs73742932	1.00[AMR][1000 genomes]
rs73743506	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743507	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743508	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743511	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744130	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73744141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963937	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28653800-28654400	Flanking Active TSS	HMEC	breast
2	chr6:28653800-28655600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:28654000-28654400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:28654000-28654400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr6:28654000-28654400	Active TSS	Adipose Nuclei	Adipose
6	chr6:28654000-28654400	Enhancers	Dnd41	blood
7	chr6:28654000-28654400	Flanking Active TSS	HUVEC	blood vessel
8	chr6:28654000-28654400	Flanking Active TSS	NHEK	skin
9	chr6:28654000-28654400	Flanking Active TSS	Osteobl	bone
10	chr6:28654000-28655800	Enhancers	A549	lung
11	chr6:28654200-28654400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:28654200-28654400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:28654200-28654400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:28654200-28654400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
15	chr6:28654200-28654400	Active TSS	Hela-S3	cervix
16	chr6:28654200-28654600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
17	chr6:28654200-28654600	Flanking Active TSS	K562	blood
18	chr6:28654200-28663600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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