Variant report

Variant	rs3734730
Chromosome Location	chr6:150570940-150570941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11155716	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17079521	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2880661	0.93[ASN][1000 genomes]
rs3734729	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870392	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4870404	0.91[ASN][1000 genomes]
rs9322254	0.98[ASN][1000 genomes]
rs9322255	0.84[ASN][1000 genomes]
rs9371362	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371852	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383739	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383740	1.00[ASN][1000 genomes]
rs9383747	0.93[ASN][1000 genomes]
rs9384270	0.98[ASN][1000 genomes]
rs9384299	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397229	0.93[ASN][1000 genomes]
rs9397234	0.93[ASN][1000 genomes]
rs9397764	1.00[ASN][1000 genomes]
rs9397777	0.98[ASN][1000 genomes]
rs9397780	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150560200-150571000	Weak transcription	HMEC	breast
2	chr6:150562600-150571000	Weak transcription	Psoas Muscle	Psoas
3	chr6:150566200-150571800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:150566800-150572200	Weak transcription	Right Ventricle	heart
5	chr6:150567000-150571600	Weak transcription	Fetal Heart	heart
6	chr6:150567800-150571800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:150568000-150571800	Weak transcription	Osteobl	bone
8	chr6:150568400-150571200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150568800-150571400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:150569000-150572000	Weak transcription	Fetal Brain Male	brain
11	chr6:150569000-150572000	Weak transcription	Lung	lung
12	chr6:150569200-150571600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150569600-150572400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:150569600-150574000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:150569600-150576800	Weak transcription	Esophagus	oesophagus
16	chr6:150569800-150573400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:150569800-150576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:150569800-150577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:150570200-150571000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:150570200-150571400	Strong transcription	NHEK	skin
21	chr6:150570200-150573600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:150570400-150571200	Enhancers	HSMM	muscle
23	chr6:150570400-150575000	Enhancers	Fetal Muscle Leg	muscle
24	chr6:150570400-150576000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:150570400-150577600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:150570600-150571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150570600-150573400	Enhancers	HSMMtube	muscle
28	chr6:150570800-150571000	Enhancers	K562	blood

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