Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150564776..150567057-chr6:150571818..150574314,2	K562	blood:
2	chr6:150557817..150561475-chr6:150561596..150566291,6	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11155716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17079521	0.96[ASN][1000 genomes]
rs2880661	0.93[ASN][1000 genomes]
rs3734729	1.00[ASN][1000 genomes]
rs3734730	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4870378	0.91[EUR][1000 genomes]
rs4870404	0.91[ASN][1000 genomes]
rs6922326	0.94[EUR][1000 genomes]
rs7741317	0.93[EUR][1000 genomes]
rs9322254	0.98[ASN][1000 genomes]
rs9322255	0.84[ASN][1000 genomes]
rs9371362	1.00[ASN][1000 genomes]
rs9371831	0.94[EUR][1000 genomes]
rs9371844	0.98[EUR][1000 genomes]
rs9371852	1.00[ASN][1000 genomes]
rs9383739	1.00[ASN][1000 genomes]
rs9383740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383747	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9384264	0.98[EUR][1000 genomes]
rs9384270	0.98[ASN][1000 genomes]
rs9384299	0.96[ASN][1000 genomes]
rs9397206	0.91[EUR][1000 genomes]
rs9397229	0.93[ASN][1000 genomes]
rs9397234	0.93[ASN][1000 genomes]
rs9397764	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397777	0.98[ASN][1000 genomes]
rs9397780	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150559800-150568800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150560200-150568400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150560200-150571000	Weak transcription	HMEC	breast
5	chr6:150562600-150571000	Weak transcription	Psoas Muscle	Psoas
6	chr6:150565000-150567000	Enhancers	Fetal Heart	heart
7	chr6:150565400-150566200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:150565400-150566800	Enhancers	Fetal Brain Male	brain
9	chr6:150565400-150567000	Enhancers	Fetal Lung	lung
10	chr6:150565400-150567200	Enhancers	Fetal Brain Female	brain
11	chr6:150565400-150569200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:150565600-150566200	Weak transcription	Osteobl	bone
13	chr6:150565600-150568400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:150565600-150568400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:150565600-150568800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:150565600-150568800	Weak transcription	NHEK	skin
17	chr6:150566000-150566800	Enhancers	K562	blood

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