Variant report

Variant	rs7741317
Chromosome Location	chr6:150547144-150547145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150544515..150547384-chr6:150552847..150554983,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11155716	0.93[EUR][1000 genomes]
rs12173725	0.97[ASN][1000 genomes]
rs12662622	0.83[JPT][hapmap]
rs3734729	0.85[CEU][hapmap]
rs4870378	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870392	0.93[EUR][1000 genomes]
rs6557376	0.92[JPT][hapmap]
rs6922326	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6936990	0.83[JPT][hapmap]
rs7749005	0.83[JPT][hapmap]
rs7753001	0.93[ASN][1000 genomes]
rs926930	0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs9322253	0.92[JPT][hapmap]
rs9371362	0.87[CEU][hapmap]
rs9371830	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9371831	1.00[CEU][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9371833	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9371834	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9371843	0.92[JPT][hapmap]
rs9371844	0.83[JPT][hapmap];0.94[EUR][1000 genomes]
rs9371852	0.87[CEU][hapmap]
rs9383732	0.92[JPT][hapmap]
rs9383740	0.93[EUR][1000 genomes]
rs9383747	0.89[EUR][1000 genomes]
rs9384259	0.92[JPT][hapmap]
rs9384261	0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9384262	0.83[JPT][hapmap]
rs9384264	1.00[CEU][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes]
rs9397206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397764	0.94[EUR][1000 genomes]
rs9478585	0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs9885696	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
3	chr6:150537200-150550800	Weak transcription	HMEC	breast
4	chr6:150537200-150550800	Weak transcription	NHEK	skin
5	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150542600-150548000	Weak transcription	Fetal Brain Female	brain
8	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:150542800-150548000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:150543000-150550800	Weak transcription	K562	blood
12	chr6:150543200-150548000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:150544800-150548200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:150545800-150547400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:150545800-150548000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:150546000-150547200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:150546000-150547600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:150546000-150548000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr6:150546000-150548000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:150546000-150548200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:150546000-150548800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:150546000-150549000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:150546200-150548000	Weak transcription	Fetal Heart	heart
24	chr6:150546400-150548200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:150546600-150547200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:150546600-150553000	Enhancers	Fetal Brain Male	brain
27	chr6:150546800-150549000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr6:150547000-150548000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:150547000-150549200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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