Variant report

Variant	rs9384259
Chromosome Location	chr6:150550969-150550970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150549697..150551669-chr6:150591233..150592989,2	K562	blood:
2	chr6:150525124..150527770-chr6:150549822..150552808,2	K562	blood:
3	chr6:150549533..150552708-chr6:150557386..150559321,3	K562	blood:
4	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:
5	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:
6	chr6:150542106..150544405-chr6:150549647..150551463,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11963544	0.81[YRI][hapmap]
rs12662622	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3734729	0.90[CHB][hapmap]
rs6557375	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6557376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922326	0.89[ASN][1000 genomes]
rs6936990	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741317	0.92[JPT][hapmap]
rs7749005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7753001	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs926930	0.84[JPT][hapmap]
rs9322253	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9322254	0.90[CHB][hapmap]
rs9322255	0.89[EUR][1000 genomes]
rs9371362	0.90[CHB][hapmap]
rs9371830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9371831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9371833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9371834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9371843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9371844	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs9371852	0.90[CHB][hapmap]
rs9383732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9384251	0.81[EUR][1000 genomes]
rs9384261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9384262	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs9384264	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs9397206	0.92[JPT][hapmap]
rs9397777	0.90[CHB][hapmap]
rs9478585	0.84[JPT][hapmap]
rs9885696	0.92[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150546600-150553000	Enhancers	Fetal Brain Male	brain
3	chr6:150548200-150551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:150548800-150551200	Weak transcription	Right Ventricle	heart
5	chr6:150548800-150553000	Enhancers	Fetal Heart	heart
6	chr6:150549600-150551000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150549800-150551000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:150549800-150554000	Weak transcription	Psoas Muscle	Psoas
9	chr6:150549800-150556400	Weak transcription	Left Ventricle	heart
10	chr6:150550000-150551000	Weak transcription	Fetal Kidney	kidney
11	chr6:150550000-150551200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:150550000-150556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:150550000-150558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:150550400-150551800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:150550600-150551600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:150550600-150551600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:150550600-150551600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:150550600-150551800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:150550600-150552200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:150550600-150552400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:150550600-150553000	Enhancers	NH-A	brain
22	chr6:150550600-150553200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:150550800-150551200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:150550800-150551200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:150550800-150551200	Enhancers	NHLF	lung
26	chr6:150550800-150551400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
27	chr6:150550800-150551400	Flanking Active TSS	Osteobl	bone
28	chr6:150550800-150551600	Enhancers	Fetal Brain Female	brain
29	chr6:150550800-150552200	Enhancers	NHEK	skin
30	chr6:150550800-150552600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:150550800-150552600	Enhancers	K562	blood
32	chr6:150550800-150552800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:150550800-150553800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:150550800-150554800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:150550800-150555400	Enhancers	HMEC	breast

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