Variant report

Variant	rs7753001
Chromosome Location	chr6:150541102-150541103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12173725	0.90[ASN][1000 genomes]
rs17079444	0.88[AFR][1000 genomes]
rs4870378	0.91[ASN][1000 genomes]
rs56000249	0.88[AFR][1000 genomes]
rs56244054	0.85[AFR][1000 genomes]
rs6557374	0.93[AFR][1000 genomes]
rs6557375	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6557376	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6936990	0.91[EUR][1000 genomes]
rs7741317	0.93[ASN][1000 genomes]
rs7747964	0.86[AFR][1000 genomes]
rs926930	0.90[ASN][1000 genomes]
rs9322255	0.86[EUR][1000 genomes]
rs9384251	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9384259	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9397206	0.93[ASN][1000 genomes]
rs9478585	0.90[ASN][1000 genomes]
rs9479970	0.86[AFR][1000 genomes]
rs9885696	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150533400-150541400	Weak transcription	Fetal Brain Female	brain
5	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
6	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
7	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:150535600-150541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:150537200-150550800	Weak transcription	HMEC	breast
10	chr6:150537200-150550800	Weak transcription	NHEK	skin
11	chr6:150540200-150541800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:150540200-150542200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:150540800-150542800	Enhancers	Fetal Heart	heart
16	chr6:150541000-150542000	Enhancers	Psoas Muscle	Psoas
17	chr6:150541000-150542600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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