Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12173725	0.97[ASN][1000 genomes]
rs4870378	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6557376	0.84[JPT][hapmap]
rs6922326	0.81[ASN][1000 genomes]
rs7741317	0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs7749005	0.85[CHD][hapmap]
rs7753001	0.90[ASN][1000 genomes]
rs9322253	0.84[JPT][hapmap]
rs9371830	0.82[JPT][hapmap]
rs9371831	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs9371833	0.90[CHD][hapmap];0.84[JPT][hapmap]
rs9371834	0.84[JPT][hapmap]
rs9371843	0.84[JPT][hapmap]
rs9383732	0.84[JPT][hapmap]
rs9384259	0.84[JPT][hapmap]
rs9384261	0.85[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap]
rs9384262	0.85[CHD][hapmap]
rs9397206	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9478585	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885696	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150529600-150536000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:150533400-150541400	Weak transcription	Fetal Brain Female	brain
6	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
7	chr6:150534200-150535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150534400-150536000	Enhancers	Fetal Heart	heart
9	chr6:150534400-150538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:150534600-150536000	Weak transcription	NHEK	skin
11	chr6:150534600-150536200	Weak transcription	HMEC	breast
12	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
13	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:150535200-150535800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150535600-150541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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