Variant report

Variant	rs9371830
Chromosome Location	chr6:150542146-150542147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150515558..150517711-chr6:150540869..150542397,2	K562	blood:
2	chr6:150542106..150544405-chr6:150549647..150551463,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12173725	0.82[ASN][1000 genomes]
rs12662622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs3734729	0.90[CHB][hapmap]
rs4870378	0.81[ASN][1000 genomes]
rs6557375	0.90[ASN][1000 genomes]
rs6557376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6922326	0.98[ASN][1000 genomes]
rs6936990	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7741317	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7749005	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs926930	0.82[JPT][hapmap]
rs9322253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9322254	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs9371362	0.90[CHB][hapmap]
rs9371831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9371833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9371834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9371843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9371844	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs9371852	0.90[CHB][hapmap]
rs9383732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9384259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9384261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9384262	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs9384264	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs9397206	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9397777	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs9478585	0.82[JPT][hapmap]
rs9885696	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
3	chr6:150537200-150550800	Weak transcription	HMEC	breast
4	chr6:150537200-150550800	Weak transcription	NHEK	skin
5	chr6:150540200-150542200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:150540800-150542800	Enhancers	Fetal Heart	heart
9	chr6:150541000-150542600	Enhancers	Fetal Brain Male	brain
10	chr6:150541400-150542400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150541400-150542600	Enhancers	Fetal Brain Female	brain
12	chr6:150541600-150542600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:150541600-150542800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:150541800-150542200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:150541800-150542200	Enhancers	Fetal Intestine Small	intestine
16	chr6:150541800-150542400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:150541800-150542600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:150541800-150542800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:150541800-150543200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:150542000-150542200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:150542000-150542400	Flanking Active TSS	K562	blood

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