Variant report

Variant	rs9371833
Chromosome Location	chr6:150545770-150545771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:
2	chr6:150544515..150547384-chr6:150552847..150554983,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12173725	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12662622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2880661	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3734729	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs4870378	0.81[ASN][1000 genomes]
rs4870404	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6557375	0.90[ASN][1000 genomes]
rs6557376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6922326	0.98[ASN][1000 genomes]
rs6936990	1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7741317	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7749005	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap]
rs926930	0.90[CHD][hapmap];0.84[JPT][hapmap]
rs9322253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322254	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9371362	0.90[CHB][hapmap]
rs9371830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9371831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9371834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9371844	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9371852	0.90[CHB][hapmap]
rs9383732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9384259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9384261	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9384262	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9384264	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9384270	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9397206	0.90[CHD][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9397229	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9397234	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9397777	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9397780	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9478585	0.84[JPT][hapmap]
rs9885696	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
3	chr6:150537200-150550800	Weak transcription	HMEC	breast
4	chr6:150537200-150550800	Weak transcription	NHEK	skin
5	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150542200-150545800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150542600-150548000	Weak transcription	Fetal Brain Female	brain
9	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:150542800-150545800	Weak transcription	Fetal Heart	heart
11	chr6:150542800-150548000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:150543000-150550800	Weak transcription	K562	blood
14	chr6:150543200-150548000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:150544800-150548200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:150545400-150546400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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